RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SMURF2Q9HAU4 748 aa14.9□□□□□ -0.02
USP28-214ENST00000545540 ZFYVE28Q9HCC9 887 aa14.9□□□□□ -0.02
USP28-214ENST00000545540 ZNHIT2Q9UHR6 403 aa14.9□□□□□ -0.02
USP28-214ENST00000545540 UPK3BL1B0FP48 263 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 UPK3BL2E5RIL1 263 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 FAM163BP0C2L3 166 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 CCT8P50990 548 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 POLR2JP52435 117 aaKnown RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 CAP1Q01518 475 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 HMGCS1Q01581 520 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 MYBPC3Q14896 1274 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 IMPG1Q17R60 797 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 STK32CQ86UX6 486 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 LRRC43Q8N309 656 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 GABPB2Q8TAK5 448 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 METTL6Q8TCB7 284 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 ROPN1LQ96C74 230 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 CINPQ9BW66 212 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 DOLKQ9UPQ8 538 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 ZNF711Q9Y462 761 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 PCDHB5Q9Y5E4 795 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 KANSL1LA0AUZ9 987 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 J3QRK9 145 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 ADAM12O43184 909 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 IL7RP16871 459 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 ALDH3B2P48448 385 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 RFTN2Q52LD8 501 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 ATXN7L2Q5T6C5 722 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 MBOAT1Q6ZNC8 495 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 KCTD8Q6ZWB6 473 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 ABI1Q8IZP0 508 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 TRPV3Q8NET8 790 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 BPIFB6Q8NFQ5 453 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 FBXL8Q96CD0 374 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 CENPNQ96H22 339 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 MYRFLQ96LU7 910 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 BIRC8Q96P09 236 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 PAIP1Q9H074 479 aaKnown RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 GID8Q9NWU2 228 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 SLC45A1Q9Y2W3 748 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 POLR3HQ9Y535 204 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 PAPSS2O95340 614 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 HRH2P25021 359 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 FLT3LGP49771 235 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 CDK9P50750 372 aaKnown RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 ATP6V0D1P61421 351 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 IL10RBQ08334 325 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 CRHR2Q13324 411 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 DCTN2Q13561 401 aaKnown RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 NR6A1Q15406 480 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 GLYATQ6IB77 296 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 Q6ZSR9 355 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 PDZD8Q8NEN9 1154 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 PROKR1Q8TCW9 393 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 MIPOL1Q8TD10 442 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 KIAA1191Q96A73 305 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 AURKBQ96GD4 344 aaPredicted RBP14.89□□□□□ -0.03
USP28-214ENST00000545540 BOCQ9BWV1 1114 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 SLC52A3Q9NQ40 469 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 PLK2Q9NYY3 685 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 ACTR3BQ9P1U1 418 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 SLC8A2Q9UPR5 921 aa14.89□□□□□ -0.03
USP28-214ENST00000545540 A0A1W2PP18 115 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 PRAMEF11O60813 436 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 ZNF623O75123 536 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 PRLP01236 227 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 ZNF182P17025 639 aaPredicted RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 HOXD9P28356 352 aaPredicted RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 ZFP36L2P47974 494 aaKnown RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 MBTPS1Q14703 1052 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 GTDC1Q4AE62 458 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 C6orf136Q5SQH8 315 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 GPSM1Q86YR5 675 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 CLEC4FQ8N1N0 589 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 DHRSXQ8N5I4 330 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 HOPXQ9BPY8 73 aaPredicted RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 CARS2Q9HA77 564 aaKnown RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 ARMC1Q9NVT9 282 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 CNOT11Q9UKZ1 510 aaKnown RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 VCANP13611 3396 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 KERAO60938 352 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 C1QCP02747 245 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 GSNP06396 782 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 IDO1P14902 403 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 HSPA7P48741 367 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 ESRRGP62508 458 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 RAB39AQ14964 217 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 CCDC117Q8IWD4 279 aaPredicted RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 PHACTR4Q8IZ21 702 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 SFRP1Q8N474 314 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 TEX26Q8N6G2 289 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 TRIM62Q9BVG3 475 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 NSUN3Q9H649 340 aaKnown RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 SUN2Q9UH99 717 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 TRMT6Q9UJA5 497 aaKnown RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 ANAPC2Q9UJX6 822 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 PCTPQ9UKL6 214 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 PCDHB9Q9Y5E1 797 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 A0A1W2PQ67 120 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 F5H5T6 163 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms