RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 COLQQ9Y215 455 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 AKT3Q9Y243 479 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 GPR52Q9Y2T5 361 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CXorf49A8MYA2 514 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 PLOD2O00469 737 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SNPHO15079 494 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 B4GALT5O43286 388 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 MAN1A2O60476 641 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 BCAS1O75363 584 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 PRSS23O95084 383 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 IL18RAPO95256 599 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 HSPA4LO95757 839 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 NDST3O95803 873 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ALDOAP04075 364 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 GNPDA1P46926 289 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 RPL10AP62906 217 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 ZNF45Q02386 682 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CRY1Q16526 586 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SLC9B1Q4ZJI4 515 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CYBRD1Q53TN4 286 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PPP6R3Q5H9R7 873 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 HABP4Q5JVS0 413 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 AGAP6Q5VW22 663 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 FAM171BQ6P995 826 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TAS2R42Q7RTR8 314 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 DHFR2Q86XF0 187 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PTRH1Q86Y79 214 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 C10orf107Q8IVU9 208 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CELF2-AS1Q8N7Q2 184 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 RNF169Q8NCN4 708 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 FAF2Q96CS3 445 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 AURKBQ96GD4 344 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 AGAP4Q96P64 663 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 YIPF4Q9BSR8 244 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PBX4Q9BYU1 374 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 NXF2Q9GZY0 626 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 ZNF395Q9H8N7 513 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 SYTL2Q9HCH5 934 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SIRT5Q9NXA8 310 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ACTR3BQ9P1U1 418 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 EGFL7Q9UHF1 273 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 MAU2Q9Y6X3 613 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 LINC01553A4QN01 128 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 H3BNC9 293 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 M0QZQ0 153 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 OGTO15294 1046 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 EXTL3O43909 919 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CST8O60676 142 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TRIM3O75382 744 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 LYPLA1O75608 230 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 DNTTP04053 509 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CYP11A1P05108 521 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 KRT8P05787 483 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 IL32P24001 234 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 HOXC12P31275 282 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 IFNA8P32881 189 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 HSD17B2P37059 387 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 GP5P40197 560 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 IST1P53990 364 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PRKCDQ05655 676 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CTF1Q16619 201 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ZACNQ401N2 412 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 C5orf22Q49AR2 442 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ZYG11AQ6WRX3 759 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PRR23BQ6ZRT6 265 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 RFPL4BQ6ZWI9 263 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SV2AQ7L0J3 742 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 VN1R5Q7Z5H4 357 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 HORMAD1Q86X24 394 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 EPHX4Q8IUS5 362 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 LURAP1LQ8IV03 231 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CDKL3Q8IVW4 592 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 UNC45BQ8IWX7 931 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 KIAA2013Q8IYS2 634 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SLC39A11Q8N1S5 342 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ZNF781Q8N8C0 355 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ZNF454Q8N9F8 522 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TMEM35BQ8NCS4 154 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TRPV3Q8NET8 790 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 GRIN3AQ8TCU5 1115 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 FBLIM1Q8WUP2 373 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 DEPDC1BQ8WUY9 529 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 LPGAT1Q92604 370 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PEX13Q92968 403 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ELMO2Q96JJ3 720 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 C11orf70Q9BRQ4 267 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 FEM1AQ9BSK4 669 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 LHX5Q9H2C1 402 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 MMP27Q9H306 513 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ANLNQ9NQW6 1124 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TBC1D13Q9NVG8 400 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 OXSMQ9NWU1 459 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 MARCH5Q9NX47 278 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 NSMCE4AQ9NXX6 385 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CHORDC1Q9UHD1 332 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 ZNF221Q9UK13 617 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 NOD1Q9Y239 953 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SNX13Q9Y5W8 968 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 NOTCH4Q99466 2003 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SCN1AP35498 2009 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms