RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ADGRG1Q9Y653 693 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 FLNBO75369 2602 aaKnown RBP12.94□□□□□ -0.34
RTN3-212ENST00000543123 SDK2Q58EX2 2172 aa12.94□□□□□ -0.34
RTN3-212ENST00000543123 SETXQ7Z333 2677 aaKnown RBP12.93□□□□□ -0.34
RTN3-212ENST00000543123 ZNF891A8MT65 544 aaPredicted RBP12.93□□□□□ -0.34
RTN3-212ENST00000543123 HACD1B0YJ81 288 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 POLR1CO15160 346 aaPredicted RBP12.93□□□□□ -0.34
RTN3-212ENST00000543123 TOX3O15405 576 aaPredicted RBP12.93□□□□□ -0.34
RTN3-212ENST00000543123 KCNJ13O60928 360 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 PPFIA2O75334 1257 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 ZRANB2O95218 330 aaKnown RBP eCLIP12.93□□□□□ -0.34
RTN3-212ENST00000543123 IDSP22304 550 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 HALP42357 657 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 MAGEA1P43355 309 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 NFATC3Q12968 1075 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 SPA17Q15506 151 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 TBR1Q16650 682 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 AGAP9Q5VTM2 703 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 KAZNQ674X7 775 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 BORAQ6PGQ7 559 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 WASH2PQ6VEQ5 465 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 TMEM26Q6ZUK4 368 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 PRICKLE2Q7Z3G6 844 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 TRAPPC5Q8IUR0 188 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 CCDC50Q8IVM0 306 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 RCOR2Q8IZ40 523 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 NLGN4XQ8N0W4 816 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 RNF214Q8ND24 703 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 NLGN4YQ8NFZ3 816 aaPredicted RBP12.93□□□□□ -0.34
RTN3-212ENST00000543123 DTX3LQ8TDB6 740 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 PMEPA1Q969W9 287 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 CALR3Q96L12 384 aaKnown RBP12.93□□□□□ -0.34
RTN3-212ENST00000543123 CATSPER2Q96P56 530 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 FSD1LQ9BXM9 530 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 WASH6PQ9NQA3 447 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 PILRAQ9UKJ1 303 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 TRHDEQ9UKU6 1024 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 PKP3Q9Y446 797 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 HYOU1Q9Y4L1 999 aa12.93□□□□□ -0.34
RTN3-212ENST00000543123 TLN1Q9Y490 2541 aaKnown RBP12.93□□□□□ -0.34
RTN3-212ENST00000543123 LOC285095A0A1B0GVY8 99 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 UBXN7O94888 489 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 IPO7O95373 1038 aaKnown RBP12.92□□□□□ -0.34
RTN3-212ENST00000543123 FAM87AP0C7U9 286 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 LIFP15018 202 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 AMD1P17707 334 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 NFKB1P19838 968 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 HLA-DPA1P20036 260 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 SPAM1P38567 509 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 ARSDP51689 593 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 WNT3AP56704 352 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 MPP3Q13368 585 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 ITGA9Q13797 1035 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 PLA2G4EQ3MJ16 856 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 LINC00303Q3SY05 128 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 LDLRAP1Q5SW96 308 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 C11orf63Q6NUN7 778 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 GLT6D1Q7Z4J2 308 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 CCDC170Q8IYT3 715 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 EXD3Q8N9H8 876 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 HTR3CQ8WXA8 447 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 CXorf40BQ96DE9 158 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 RTP4Q96DX8 246 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 QKIQ96PU8 341 aaKnown RBP eCLIP12.92□□□□□ -0.341e-6■■■□□ 15.5
RTN3-212ENST00000543123 TBC1D10AQ9BXI6 508 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 ADNPQ9H2P0 1102 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 GPN2Q9H9Y4 310 aaPredicted RBP12.92□□□□□ -0.34
RTN3-212ENST00000543123 STARD5Q9NSY2 213 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 UBP1Q9NZI7 540 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 SAE1Q9UBE0 346 aaPredicted RBP12.92□□□□□ -0.34
RTN3-212ENST00000543123 KLHL3Q9UH77 587 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 DNAJC16Q9Y2G8 782 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 SPO11Q9Y5K1 396 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 ALG6Q9Y672 507 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 BSNQ9UPA5 3926 aa12.92□□□□□ -0.34
RTN3-212ENST00000543123 hCG_1818297A0A087WSY0 165 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 ZNF189O75820 626 aaPredicted RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 STK17BO94768 372 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 STK10O94804 968 aaKnown RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 PECAM1P16284 738 aaPredicted RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 WT1P19544 449 aaPredicted RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 CYLC1P35663 651 aaPredicted RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 CAPZBP47756 277 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 MC1RQ01726 317 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 ABHD18Q0P651 414 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 WASHC5Q12768 1159 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 TMEM115Q12893 351 aaPredicted RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 TBX2Q13207 712 aaPredicted RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 MAP7Q14244 749 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 SEPT7Q16181 437 aaKnown RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 PPP2R5EQ16537 467 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 ATP13A5Q4VNC0 1218 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 SIRPB2Q5JXA9 342 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 ZNF648Q5T619 568 aaPredicted RBP12.91□□□□□ -0.34
RTN3-212ENST00000543123 CCDC181Q5TID7 509 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 ITPRIPL1Q6GPH6 555 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 KLHL35Q6PF15 583 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 SARM1Q6SZW1 724 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 KDELC1Q6UW63 502 aa12.91□□□□□ -0.34
RTN3-212ENST00000543123 ABRAXAS1Q6UWZ7 409 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms