RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ATP13A3Q9H7F0 1226 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 AIG1Q9NVV5 245 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 PLK2Q9NYY3 685 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 NDUFA13Q9P0J0 144 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 ZMYM5Q9UJ78 669 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 TRIM17Q9Y577 477 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 PCDHGC4Q9Y5F7 938 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 ST14Q9Y5Y6 855 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 MRPL42Q9Y6G3 142 aaKnown RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 CAPN8A6NHC0 703 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 BTN3A1O00481 513 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 PIP5K1BO14986 540 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 WDR47O94967 919 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 S100BP04271 92 aaPredicted RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 LYNP07948 512 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 ALDOCP09972 364 aaKnown RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 CSKP41240 450 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 CCL23P55773 120 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 SH3BGRP55822 239 aaPredicted RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 ERVK-8P63133 956 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 DYNC1I2Q13409 638 aaKnown RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 PTPRCAPQ14761 206 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 SPOUT1Q5T280 376 aaKnown RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 MACC1Q6ZN28 852 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 GPRIN3Q6ZVF9 776 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 FUNDC1Q8IVP5 155 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 KIAA1958Q8N8K9 716 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 BHLHE22Q8NFJ8 381 aaPredicted RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 POP5Q969H6 163 aaKnown RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 LINGO1Q96FE5 620 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 PPP1R36Q96LQ0 422 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 DEFB118Q96PH6 123 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 HTATIP2Q9BUP3 242 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 CPEB1Q9BZB8 566 aaKnown RBP9.77□□□□□ -0.85
SS18-205ENST00000542420 ARMC1Q9NVT9 282 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 POLG2Q9UHN1 485 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 GPR45Q9Y5Y3 372 aa9.77□□□□□ -0.85
SS18-205ENST00000542420 KANSL1LA0AUZ9 987 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 RAD51BO15315 384 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 TSPAN3O60637 253 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 SNAP91O60641 907 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CRCPO75575 148 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PIRTP0C851 137 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CTSAP10619 480 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 IRF1P10914 325 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CCL5P13501 91 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 HDCP19113 662 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 DGKAP23743 735 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PEX2P28328 305 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 MZF1P28698 734 aaPredicted RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 PIK3CGP48736 1102 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CREB5Q02930 508 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 TLE2Q04725 743 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 DMC1Q14565 340 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CDKN3Q16667 212 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 SFT2D3Q587I9 215 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CLEC6AQ6EIG7 209 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 BLOC1S3Q6QNY0 202 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 C16orf59Q7L2K0 433 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PIANPQ8IYJ0 282 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ST13P4Q8IZP2 240 aaPredicted RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 RYBPQ8N488 228 aaPredicted RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 PACRGLQ8N7B6 248 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 TRPC4APQ8TEL6 797 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 NCSTNQ92542 709 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ULK4Q96C45 1275 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 GCNAQ96QF7 691 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 LRRC3Q9BY71 257 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CLPBQ9H078 707 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ZBP1Q9H171 429 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 EPB41L1Q9H4G0 881 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ZFYVE1Q9HBF4 777 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PREBQ9HCU5 417 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 AP3M1Q9Y2T2 418 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 OARD1Q9Y530 152 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CPQQ9Y646 472 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 TRAV19A0A0A6YYK7 116 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 A0A1W2PP18 115 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 NPEPPSL1A6NEC2 478 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 E7ENX8 843 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 E2F3O00716 465 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ANGPT2O15123 496 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 CFLARO15519 480 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 EEDO75530 441 aaKnown RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 TCF3P15923 654 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 VCLP18206 1134 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 SERPINA4P29622 427 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 SNRPD1P62314 119 aaKnown RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 MS4A2Q01362 244 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 RCAN2Q14206 197 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 PPP1R3AQ16821 1122 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 KIF19Q2TAC6 998 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 MAP7D1Q3KQU3 841 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 TTLL9Q3SXZ7 439 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 LCN8Q6JVE9 175 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 TMC8Q8IU68 726 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 ELMOD1Q8N336 334 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 TMEM102Q8N9M5 508 aaPredicted RBP9.76□□□□□ -0.85
SS18-205ENST00000542420 SHKBP1Q8TBC3 707 aa9.76□□□□□ -0.85
SS18-205ENST00000542420 SH3RF2Q8TEC5 729 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms