RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	C1QTNF7	Q9BXJ2	289 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	TEX101	Q9BY14	249 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	FAM126A	Q9BYI3	521 aa	Predicted RBP	9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	PCED1A	Q9H1Q7	454 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	CAAP1	Q9H8G2	361 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	ZSCAN32	Q9NX65	697 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	ZDHHC3	Q9NYG2	299 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	TMEM98	Q9Y2Y6	226 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	MTO1	Q9Y2Z2	717 aa	Known RBP	9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	HS3ST3A1	Q9Y663	406 aa		9.24	□□□□□ -0.93
DDX55-208	ENST00000541259	IGLV3-16	A0A075B6K0	115 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	UBA6	A0AVT1	1052 aa	Predicted RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	HMX2	A2RU54	273 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TMEM202	A6NGA9	273 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	IQCF5	A8MTL0	148 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	MAP2K7	O14733	419 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	SGTA	O43765	313 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TCEA3	O75764	348 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	FUCA1	P04066	466 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	WNT1	P04628	370 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ITPKA	P23677	461 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TEAD1	P28347	426 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	AKT1	P31749	480 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	GP5	P40197	560 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CD151	P48509	253 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	DHPS	P49366	369 aa	Predicted RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TTPA	P49638	278 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	EIF3B	P55884	814 aa	Known RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	PFN3	P60673	137 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ZNF844	Q08AG5	666 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	IFFO1	Q0D2I5	559 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TMEM115	Q12893	351 aa	Predicted RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	NAB1	Q13506	487 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	BMPR2	Q13873	1038 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	AARS2	Q5JTZ9	985 aa	Known RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CTSL3P	Q5NE16	218 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	LDLRAP1	Q5SW96	308 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	RBM20	Q5T481	1227 aa	Known RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	GRTP1	Q5TC63	336 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	LYPLAL1	Q5VWZ2	237 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	PMS2CL	Q68D20	193 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	DOK6	Q6PKX4	331 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	LAYN	Q6UX15	382 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CERS6	Q6ZMG9	384 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259		Q6ZSR6	202 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	KIAA0408	Q6ZU52	694 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	LPCAT2	Q7L5N7	544 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	DET1	Q7L5Y6	550 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ABI3BP	Q7Z7G0	1075 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ADGRG6	Q86SQ4	1221 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ZC3HC1	Q86WB0	502 aa	Known RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	RGL4	Q8IZJ4	473 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CLDN19	Q8N6F1	224 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	RASGEF1A	Q8N9B8	481 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ZBTB44	Q8NCP5	570 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	OR13H1	Q8NG92	308 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	C1orf216	Q8TAB5	229 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	DNASE2B	Q8WZ79	361 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	FOXJ1	Q92949	421 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	SGF29	Q96ES7	293 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	BIRC8	Q96P09	236 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TCF12	Q99081	682 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	NDN	Q99608	321 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	COPS8	Q99627	209 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	RBBP8	Q99708	897 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CPNE1	Q99829	537 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CCDC77	Q9BR77	488 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	MIR1-1HG	Q9H1L0	117 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	OR2AG1	Q9H205	316 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	P2RY12	Q9H244	342 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	WDR26	Q9H7D7	661 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	AASDHPPT	Q9NRN7	309 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	INTS10	Q9NVR2	710 aa	Known RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	SMOX	Q9NWM0	555 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ATXN10	Q9UBB4	475 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	GALP	Q9UBC7	116 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	TBK1	Q9UHD2	729 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	SLC24A2	Q9UI40	661 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	DMTF1	Q9Y222	760 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CACNA1H	O95180	2353 aa		9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	ATXN2	Q99700	1313 aa	Known RBP	9.23	□□□□□ -0.93
DDX55-208	ENST00000541259	CABIN1	Q9Y6J0	2220 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259		A0A1W2PR77	199 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	OR2AG2	A6NM03	316 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	AGPS	O00116	658 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	RASGRF2	O14827	1237 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	LILRB5	O75023	590 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	ASMTL	O95671	621 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	CEACAM5	P06731	702 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	PYGL	P06737	847 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	INHBA	P08476	426 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	ITGA2B	P08514	1039 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	MYCLP1	P12525	358 aa	Predicted RBP	9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	ATP1B2	P14415	290 aa	Predicted RBP	9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	ZNF7	P17097	686 aa	Predicted RBP	9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	ZNF8	P17098	575 aa	Predicted RBP	9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	ITGB6	P18564	788 aa		9.22	□□□□□ -0.93
DDX55-208	ENST00000541259	MSH3	P20585	1137 aa		9.22	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms