RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 DSN1Q9H410 356 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 RIBC2Q9H4K1 309 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 CPNE5Q9HCH3 593 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 ENTPD7Q9NQZ7 604 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 TBC1D14Q9P2M4 693 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 ERVK-18Q9QC07 812 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 DKK3Q9UBP4 350 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 AASSQ9UDR5 926 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 TNPO2O14787 897 aaKnown RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 BCKDKO14874 412 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 HTR1AP08908 422 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 DBTP11182 482 aaKnown RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 FSHRP23945 695 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 HRH2P25021 359 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 SIM2Q14190 667 aaPredicted RBP12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 DPY19L1Q2PZI1 675 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 CATSPEREQ5SY80 951 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 MFSD4AQ8N468 514 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 LILRB4Q8NHJ6 448 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 SLC10A4Q96EP9 437 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 ASB2Q96Q27 587 aa12.74□□□□□ -0.37
SFSWAP-209ENST00000540469 PDZK1P1A8MUH7 402 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 MATN4O95460 622 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 TGFB3P10600 412 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 S100A5P33763 92 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 GABARAPL2P60520 117 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 CCNA1P78396 465 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 CLPPQ16740 277 aaPredicted RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 OTUD1Q5VV17 481 aaPredicted RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 ISCA2Q86U28 154 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 DTWD1Q8N5C7 304 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 ZNF540Q8NDQ6 660 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 GAD1Q99259 594 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 GMLQ99445 158 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 RBM4BQ9BQ04 359 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 RBM4Q9BWF3 364 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 TRIT1Q9H3H1 467 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 NTN4Q9HB63 628 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 CNGB3Q9NQW8 809 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 DNMT3BQ9UBC3 853 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 TPRKBQ9Y3C4 175 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 UBR3Q6ZT12 1888 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 UBA6A0AVT1 1052 aaPredicted RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 OR51F1A6NGY5 319 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 YJEFN3A6XGL0 299 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 MGAMO43451 1857 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 DYRK3O43781 588 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 BEST1O76090 585 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 PGK2P07205 417 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 USP17L7P0C7H9 530 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 NPR3P17342 541 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 HTR1EP28566 365 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 GTF2E2P29084 291 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 NPTX1Q15818 432 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 RBM23Q86U06 439 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 PTRH1Q86Y79 214 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 LRRC49Q8IUZ0 686 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 ATP6V0D2Q8N8Y2 350 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 B3GALNT2Q8NCR0 500 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 CHST13Q8NET6 341 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 BPIFB1Q8TDL5 484 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 RPL3LQ92901 407 aaKnown RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 ZFYVE19Q96K21 471 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 FAM124BQ9H5Z6 455 aaPredicted RBP12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 RNF112Q9ULX5 631 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 CSADQ9Y600 493 aa12.73□□□□□ -0.37
SFSWAP-209ENST00000540469 GABARAPO95166 117 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 STAU1O95793 577 aaKnown RBP12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 AKAP5P24588 427 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 CDKN2DP55273 166 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 PRKG2Q13237 762 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 LRIT3Q3SXY7 679 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 DCAF15Q66K64 600 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 LRRC8DQ7L1W4 858 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 FBXO16Q8IX29 292 aaPredicted RBP12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 FBXO39Q8N4B4 442 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 SVOPQ8N4V2 548 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 PTERQ96BW5 349 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 SLC47A1Q96FL8 570 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 AMBRA1Q9C0C7 1298 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 HOXD1Q9GZZ0 328 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 SCUBE2Q9NQ36 999 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 NECTIN3Q9NQS3 549 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 PAK1IP1Q9NWT1 392 aaPredicted RBP12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ADGRE2Q9UHX3 823 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 GPSM3Q9Y4H4 160 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 AGRPO00253 132 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 IL12AP29459 219 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 GTF2H3Q13889 308 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 PPP2R2DQ66LE6 453 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 HID1Q8IV36 788 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 TMEM199Q8N511 208 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 PAPD5Q8NDF8 572 aaKnown RBP12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 FRS2Q8WU20 508 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 HBEGFQ99075 208 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 COLEC11Q9BWP8 271 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 ACTR8Q9H981 624 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 GOLGA2P5Q9HBQ8 144 aa12.72□□□□□ -0.37
SFSWAP-209ENST00000540469 TLR9Q9NR96 1032 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms