RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TPMTP51580 245 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 PRKD1Q15139 912 aaPredicted RBP8.7□□□□□ -1.02
YBX3-208ENST00000540447 GPR68Q15743 365 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 IGSF11Q5DX21 431 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 HYIQ5T013 277 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 CCDC32Q9BV29 185 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 IFT27Q9BW83 186 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 CDC14AQ9UNH5 594 aa8.7□□□□□ -1.02
YBX3-208ENST00000540447 DCAF8L1A6NGE4 600 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 STAU1O95793 577 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 DARSP14868 501 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 NKX6-1P78426 367 aaPredicted RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 TRIM28Q13263 835 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 EXOC3L2Q2M3D2 409 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 UBXN11Q5T124 520 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 PNCKQ6P2M8 343 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ZNF280BQ86YH2 543 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ARMC10Q8N2F6 343 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 LNX2Q8N448 690 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ESX1Q8N693 406 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 DAGLBQ8NCG7 672 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 OR5T2Q8NGG2 359 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 OR14K1Q8NGZ2 314 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 REPS1Q96D71 796 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 COQ10AQ96MF6 247 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 PHB2Q99623 299 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 FNDC11Q9BVV2 318 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 TGIF2Q9GZN2 237 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 RFXANKO14593 260 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ULK1O75385 1050 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 CDRT1O95170 752 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 SCELO95171 688 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 SLC2A3P11169 496 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 KDELR1P24390 212 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 PTPN9P43378 593 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 MTAPQ13126 283 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 MEP1AQ16819 746 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 PAN3Q58A45 887 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 ZNF782Q6ZMW2 699 aaPredicted RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 ZNF781Q8N8C0 355 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ABHD11Q8NFV4 315 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 STAG3L4Q8TBR4 150 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 SLC5A11Q8WWX8 675 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 RTFDC1Q9BY42 306 aaPredicted RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 FOLH1BQ9HBA9 442 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 BEX1Q9HBH7 125 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 B3GNT3Q9Y2A9 372 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 A0A075B6Q4 140 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 LOC100130705A0A1B0GUX0 176 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 LCMT2O60294 686 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 RPS6KA4O75676 772 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 OR6A2O95222 327 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 HMGCRP04035 888 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 TFEBP19484 476 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 UBA1P22314 1058 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 DNAJB2P25686 324 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 HOXD13P35453 343 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 MTFR2Q6P444 385 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 TERB2Q8NHR7 220 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 TAS1R2Q8TE23 839 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ELMO3Q96BJ8 720 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 FUNDC2Q9BWH2 189 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ZFP14Q9HCL3 533 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ERVK-7P63135 1459 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 MEN1O00255 615 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 INPPL1O15357 1258 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 DGAT1O75907 488 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 HOXB8P17481 243 aaPredicted RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 ECHS1P30084 290 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 CBX5P45973 191 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 GPX6P59796 221 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 CMC1Q7Z7K0 106 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 C12orf45Q8N5I9 185 aaPredicted RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 ADAM32Q8TC27 787 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 AUTS2Q8WXX7 1259 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 NR4A3Q92570 626 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 SGTBQ96EQ0 304 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ZNF668Q96K58 619 aaPredicted RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 OR2M4Q96R27 311 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 GAL3ST1Q99999 423 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 NXF3Q9H4D5 531 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 CCDC86Q9H6F5 360 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 CYP3A43Q9HB55 503 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 C1orf109Q9NX04 203 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 PPP4R1LQ9P1A2 415 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 DYRK1BQ9Y463 629 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 TNPO3Q9Y5L0 923 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 FKBP7Q9Y680 259 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 LAMC3Q9Y6N6 1575 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 UPK1BO75841 260 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 AOC1P19801 751 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 MUTP22033 750 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ADAM8P78325 824 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 MC2RQ01718 297 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 AIMP2Q13155 320 aaKnown RBP8.69□□□□□ -1.02
YBX3-208ENST00000540447 TMEM132DQ14C87 1099 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 C21orf62-AS1Q17RA5 79 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 ESCO2Q56NI9 601 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 TCEAL5Q5H9L2 206 aa8.69□□□□□ -1.02
YBX3-208ENST00000540447 KCNT2Q6UVM3 1135 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms