RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 MMP8P22894 467 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 HSD17B2P37059 387 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ELOCQ15369 112 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 KLHL24Q6TFL4 600 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF852Q6ZMS4 543 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 LRRTM4Q86VH4 590 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 OR8H2Q8N162 312 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 KCTD13Q8WZ19 329 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 APOLD1Q96LR9 279 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 DGAT2Q96PD7 388 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 HAPLN3Q96S86 360 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 OLFM1Q99784 485 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 SEMA6AQ9H2E6 1030 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 LRRC19Q9H756 370 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CLN6Q9NWW5 311 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 STON1Q9Y6Q2 735 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 FAM153BP0C7A2 387 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 PTPN4P29074 926 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 NSG1P42857 185 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 HSPB3Q12988 150 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 MYLK3Q32MK0 819 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CYP2U1Q7Z449 544 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 C10orf107Q8IVU9 208 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 DENND1AQ8TEH3 1009 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 HNRNPLLQ8WVV9 542 aaKnown RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 TEKT5Q96M29 485 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CYP2S1Q96SQ9 504 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 C8orf33Q9H7E9 229 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 STMN3Q9NZ72 180 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ATXN2Q99700 1313 aaKnown RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 RGPD8O14715 1765 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 MTMR11A4FU01 709 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 MAGEB3O15480 346 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ALPIP09923 528 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 RBMS1P29558 406 aaKnown RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ST13P50502 369 aaKnown RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 IRAK1P51617 712 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 IFI35P80217 286 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 PON2Q15165 354 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 FAM91A1Q658Y4 838 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 LRP10Q7Z4F1 713 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 SNX20Q7Z614 316 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CMTM8Q8IZV2 173 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 RELTQ969Z4 430 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 LRTM1Q9HBL6 345 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ARMCX1Q9P291 453 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF624Q9P2J8 865 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 HCN4Q9Y3Q4 1203 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CLCA3PQ9Y6N3 262 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 KIF13AQ9H1H9 1805 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 STK16O75716 305 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 WFS1O76024 890 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 AP2A1O95782 977 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 TPSB2P20231 275 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 PPIBP23284 216 aaKnown RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ADSLP30566 484 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 HSPA7P48741 367 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CASP6P55212 293 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 MRPS22P82650 360 aaKnown RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 TPSAB1Q15661 275 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ARMCX4Q5H9R4 360 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 PLEKHA7Q6IQ23 1121 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 BRAT1Q6PJG6 821 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 SLC29A4Q7RTT9 530 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ZDHHC13Q8IUH4 622 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 AADATQ8N5Z0 425 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF461Q8TAF7 563 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 MR1Q95460 341 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 SLC47A1Q96FL8 570 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CCM2Q9BSQ5 444 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 ZSCAN5AQ9BUG6 496 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 SPRTNQ9H040 489 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 NOL11Q9H8H0 719 aaKnown RBP9.38□□□□□ -0.91
PTPRB-204ENST00000538708 XPNPEP1Q9NQW7 623 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 CHRAC1Q9NRG0 131 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 TRPS1Q9UHF7 1281 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 MAP4K5Q9Y4K4 846 aa9.38□□□□□ -0.91
PTPRB-204ENST00000538708 GALTP07902 379 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 IDO1P14902 403 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 OXTRP30559 389 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 PCYT1AP49585 367 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 PKNOX1P55347 436 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 MPP1Q00013 466 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 CREB5Q02930 508 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 ITGADQ13349 1161 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 VPS26BQ4G0F5 336 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 PLEKHG4Q58EX7 1191 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 ZNF567Q8N184 647 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 BHLHE22Q8NFJ8 381 aaPredicted RBP9.37□□□□□ -0.91
PTPRB-204ENST00000538708 TFAP2BQ92481 460 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 GRIP2Q9C0E4 1043 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 KLHL25Q9H0H3 589 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 APOBEC3GQ9HC16 384 aaKnown RBP9.37□□□□□ -0.91
PTPRB-204ENST00000538708 C10orf71Q711Q0 1435 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 KIF1CO43896 1103 aaKnown RBP9.37□□□□□ -0.91
PTPRB-204ENST00000538708 ATP5A1P25705 553 aaKnown RBP9.37□□□□□ -0.91
PTPRB-204ENST00000538708 CCR8P51685 355 aa9.37□□□□□ -0.91
PTPRB-204ENST00000538708 C1QTNF8P60827 252 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms