RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 GPR33Q49SQ1 333 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 NLRP9Q7RTR0 991 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 ZNF438Q7Z4V0 828 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 TRAPPC5Q8IUR0 188 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 NXPE1Q8N323 547 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 DCBLD1Q8N8Z6 715 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 ZNF592Q92610 1267 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 PEX13Q92968 403 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 TTC25Q96NG3 672 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 ABCG4Q9H172 646 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 TBC1D29Q9UFV1 150 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 CRLS1Q9UJA2 301 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 CLCA2Q9UQC9 943 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 KCNK6Q9Y257 313 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 TCAF1Q9Y4C2 921 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 SLC30A1Q9Y6M5 507 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 RNF215Q9Y6U7 377 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 RP1P56715 2156 aa14.83□□□□□ -0.04
CPSF1-208ENST00000532560 BPTFQ12830 3046 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 A6NCN8 305 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 NTN3O00634 580 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-208ENST00000532560 TCEA3O75764 348 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 ECEL1O95672 775 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 MT-CO3P00414 261 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 SLC2A4P14672 509 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 JUPP14923 745 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 MSH3P20585 1137 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 ADRA1DP25100 572 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 FASLGP48023 281 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 VPS41P49754 854 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 CTSCP53634 463 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 ACVR1Q04771 509 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 NR1D2Q14995 579 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 PLA2G4EQ3MJ16 856 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 CCDC38Q502W7 563 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 ZNF534Q76KX8 674 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 C11orf96Q7Z7L8 435 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 CREG2Q8IUH2 290 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 SFRP1Q8N474 314 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 ARL14Q8N4G2 192 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 RASGEF1AQ8N9B8 481 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 OR13J1Q8NGT2 312 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 HEXDCQ8WVB3 486 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 PATE1Q8WXA2 126 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 SLCO2A1Q92959 643 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 CDKN2AIPNLQ96HQ2 116 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 ZNF514Q96K75 400 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-208ENST00000532560 DEPDC7Q96QD5 511 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 KLC4Q9NSK0 619 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 LRIT1Q9P2V4 623 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 RABGEF1Q9UJ41 708 aa14.82□□□□□ -0.04
CPSF1-208ENST00000532560 IGLV3-16A0A075B6K0 115 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 KCNJ13O60928 360 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 EML2O95834 649 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 RALBP11234 206 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 F3P13726 295 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 VCLP18206 1134 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 ACRV1P26436 265 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 ARSDP51689 593 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 CACNG1Q06432 222 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 DMPKQ09013 629 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 TARDBPQ13148 414 aaKnown RBP eCLIP14.81□□□□□ -0.04
CPSF1-208ENST00000532560 CAMK2BQ13554 666 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 TUBB2AQ13885 445 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 ZRANB3Q5FWF4 1079 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 TSTD2Q5T7W7 516 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 ARMC3Q5W041 872 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 LRRC8BQ6P9F7 803 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 IYDQ6PHW0 289 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 UNQ6494/PRO21346Q6UXR6 183 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 SPRED1Q7Z699 444 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 MARCH9Q86YJ5 346 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 CCNJLQ8IV13 435 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 PPHLN1Q8NEY8 458 aaKnown RBP14.81□□□□□ -0.04
CPSF1-208ENST00000532560 SLC37A2Q8TED4 501 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 CAPZA3Q96KX2 299 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 COPS8Q99627 209 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 TUBB2BQ9BVA1 445 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 IL22Q9GZX6 179 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 OSGEPL1Q9H4B0 414 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 BFARQ9NZS9 450 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 SLC23A2Q9UGH3 650 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 PCYOX1Q9UHG3 505 aa14.81□□□□□ -0.04
CPSF1-208ENST00000532560 DNMT3AQ9Y6K1 912 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-208ENST00000532560 CEP295Q9C0D2 2601 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 KIR2DS5A0A0G2JLQ3 304 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 A0A0G2JNG1 304 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 A0A1W2PQM1 296 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 TCRBV7S3A2A0A539 114 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 CCDC78A2IDD5 438 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 OR2AG2A6NM03 316 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 OR5K4A6NMS3 321 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 RHPN2P1A8MT19 583 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 D6RAR5 112 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 CFAP99D6REC4 459 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 KIR2DS3K7RE56 304 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 FOXN2P32314 431 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 GPR3P46089 330 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 NPY2RP49146 381 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 SESN2P58004 480 aaPredicted RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms