RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PKP3Q9Y446 797 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 PCDHGA7Q9Y5G6 932 aa10.05□□□□□ -0.8
VPS28-204ENST00000526054 TMEM202A6NGA9 273 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 C2orf81A6NN90 581 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 J3QKU1 62 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 AP3B1O00203 1094 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 STX7O15400 261 aaKnown RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 PPFIA2O75334 1257 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 SUN1O94901 812 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 HOXC4P09017 264 aaPredicted RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 MYCLP1P12525 358 aaPredicted RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 HGFP14210 728 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 GLB1P16278 677 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 SLC5A2P31639 672 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 CDK16Q00536 496 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 CKAP4Q07065 602 aaKnown RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 OLIG2Q13516 323 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 TAF1AQ15573 450 aaPredicted RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 TRIP13Q15645 432 aaPredicted RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 C14orf28Q4W4Y0 310 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 CERCAMQ5T4B2 595 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 DENND5AQ6IQ26 1287 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 RFLNAQ6ZTI6 216 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 SPRED1Q7Z699 444 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 HEATR4Q86WZ0 1026 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 KLHL7Q8IXQ5 586 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 TTC30BQ8N4P2 665 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 Q8N9G6 341 aaPredicted RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 DNAAF3Q8N9W5 541 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 FAM46DQ8NEK8 389 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 GPR156Q8NFN8 814 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 BRSK1Q8TDC3 778 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 ZNF592Q92610 1267 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 SLCO2A1Q92959 643 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 SCAMP4Q969E2 229 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 MED8Q96G25 268 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 PLEKHG4BQ96PX9 1271 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 RIOK2Q9BVS4 552 aaKnown RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 DPEP2Q9H4A9 486 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS28-204ENST00000526054 PISDQ9UG56 409 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 PCYOX1Q9UHG3 505 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 MOSPD1Q9UJG1 213 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 LOXL2Q9Y4K0 774 aa10.04□□□□□ -0.8
VPS28-204ENST00000526054 ASH1LQ9NR48 2969 aaKnown RBP10.04□□□□□ -0.8
VPS28-204ENST00000526054 TENM4Q6N022 2769 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 PRSS38A1L453 326 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 TNFRSF10CO14798 259 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 AURKAO14965 403 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 NOBOXO60393 691 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 LIPCP11150 499 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 BPIP17213 487 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 TPSB2P20231 275 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 LPOP22079 712 aaPredicted RBP10.03□□□□□ -0.8
VPS28-204ENST00000526054 TRIM23P36406 574 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 SPAM1P38567 509 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 SARNPP82979 210 aaKnown RBP10.03□□□□□ -0.8
VPS28-204ENST00000526054 CDK3Q00526 305 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 LAMB3Q13751 1172 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 PTK6Q13882 451 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 SEPT6Q14141 434 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 DHX34Q14147 1143 aaKnown RBP10.03□□□□□ -0.8
VPS28-204ENST00000526054 TPSAB1Q15661 275 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 MAP9Q49MG5 647 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 HENMT1Q5T8I9 393 aaKnown RBP10.03□□□□□ -0.8
VPS28-204ENST00000526054 ALS2CLQ60I27 953 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 PDPK2PQ6A1A2 396 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 ADAMTSL4Q6UY14 1074 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 SYDE1Q6ZW31 735 aaPredicted RBP10.03□□□□□ -0.8
VPS28-204ENST00000526054 TRAM1L1Q8N609 369 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 OR52K1Q8NGK4 314 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 KIF18AQ8NI77 898 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 TMEM159Q96B96 161 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 EID2BQ96D98 161 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 ZSCAN5AQ9BUG6 496 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 SPATA16Q9BXB7 569 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 TEX101Q9BY14 249 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 TMEM168Q9H0V1 697 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 SUDS3Q9H7L9 328 aaPredicted RBP10.03□□□□□ -0.8
VPS28-204ENST00000526054 CYP4F12Q9HCS2 524 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 BPIFA1Q9NP55 256 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 IL17CQ9P0M4 197 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 ASIC3Q9UHC3 531 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 APPL1Q9UKG1 709 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 ACSL6Q9UKU0 697 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 RNF215Q9Y6U7 377 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 UNC13CQ8NB66 2214 aa10.03□□□□□ -0.8
VPS28-204ENST00000526054 ARHGEF17Q96PE2 2063 aaPredicted RBP10.02□□□□□ -0.81
VPS28-204ENST00000526054 PRAMEF33A0A0G2JMD5 474 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 GLYATL1P3A0A0U1RQE8 302 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 HEATR9A2RTY3 570 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 B8ZZF3 427 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 AGRPO00253 132 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 NUDT21O43809 227 aaKnown RBP10.02□□□□□ -0.81
VPS28-204ENST00000526054 PRAMEF10O60809 474 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 URI1O94763 535 aaPredicted RBP10.02□□□□□ -0.81
VPS28-204ENST00000526054 SOD1P00441 154 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 PNLIPP16233 465 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 TPH1P17752 444 aa10.02□□□□□ -0.81
VPS28-204ENST00000526054 ITIH1P19827 911 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms