RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 NMT1P30419 496 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 LONP1P36776 959 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 IFNAR2P48551 515 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 AP3M2P53677 418 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 SLC12A3P55017 1021 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 TPTEP56180 551 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 RAB1AP62820 205 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 NOP14P78316 857 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 SLC7A9P82251 487 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 KDSRQ06136 332 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 MAPK7Q13164 816 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 MTF1Q14872 753 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 TMEM132DQ14C87 1099 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 EIF2S3LQ2VIR3 472 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 MGAT5BQ3V5L5 792 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 AARS2Q5JTZ9 985 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 PCID2Q5JVF3 399 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 GLRA4Q5JXX5 417 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 SNX30Q5VWJ9 437 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 C9orf57Q5W0N0 161 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 KIAA1324Q6UXG2 1013 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 ZNF783Q6ZMS7 281 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 TAOK1Q7L7X3 1001 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 WDR53Q7Z5U6 358 aaPredicted RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 TADA2BQ86TJ2 420 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 DTX2Q86UW9 622 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 EFCAB13Q8IY85 973 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 DAW1Q8N136 415 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 C4orf32Q8N8J7 132 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 ZNF557Q8N988 423 aaPredicted RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 FAM184AQ8NB25 1140 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 STKLD1Q8NE28 680 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 CADM4Q8NFZ8 388 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 XAGE5Q8WWM1 108 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 DDB2Q92466 427 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 SENP8Q96LD8 212 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 FUCA2Q9BTY2 467 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 TTLL2Q9BWV7 592 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 TMEM60Q9H2L4 133 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 SERHLQ9NQF3 203 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 OLFML3Q9NRN5 406 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 DDX19AQ9NUU7 478 aaKnown RBP4.06□□□□□ -1.76
USP54-217ENST00000498213 XPR1Q9UBH6 696 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 SATB2Q9UPW6 733 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 COL6A5A8TX70 2615 aa4.06□□□□□ -1.76
USP54-217ENST00000498213 MN1Q10571 1320 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 A0A1W2PNU3 283 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 KRTAP29-1A8MX34 341 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 H0YIZ8 118 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 YKT6O15498 198 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 HOXC11O43248 304 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 TBCAO75347 108 aaKnown RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 TACC1O75410 805 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 RTN3O95197 1032 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 VNN2O95498 520 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 DDAH2O95865 285 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 FESP07332 822 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 IL6RP08887 468 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 NPSP0C0P6 89 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 OR4Q2P0C623 313 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 CXCL8P10145 99 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 CPA1P15085 419 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 HMGA1P17096 107 aaKnown RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 ATF6P18850 670 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ABCB4P21439 1286 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 OXTRP30559 389 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 UBA7P41226 1012 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 DUSP3P51452 185 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 PRKAG1P54619 331 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 POLE2P56282 527 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 RBP5P82980 135 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ENPEPQ07075 957 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 GOLGA8FQ08AF8 430 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 GOLGA8DPQ0D2H9 430 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 FOXF2Q12947 444 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 KCNB1Q14721 858 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ZNF77Q15935 545 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ME3Q16798 604 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 EARS2Q5JPH6 523 aaKnown RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 FAM171BQ6P995 826 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 DENND5BQ6ZUT9 1274 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 MAVSQ7Z434 540 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 VASH2Q86V25 355 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 HEATR4Q86WZ0 1026 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 CCDC83Q8IWF9 413 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 SLC15A3Q8IY34 581 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 MPP5Q8N3R9 675 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 TTC39CQ8N584 583 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ATAD1Q8NBU5 361 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 SPATA3Q8NHX4 192 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 HTR3CQ8WXA8 447 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ATG4AQ8WYN0 398 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 RFFLQ8WZ73 363 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 IGSF8Q969P0 613 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 R3HDM4Q96D70 268 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 BICD1Q96G01 975 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 C8orf48Q96LL4 319 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 LURAP1Q96LR2 239 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 AIFM3Q96NN9 605 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 SLITRK1Q96PX8 696 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms