RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CDC42EP4Q9H3Q1 356 aaKnown RBP11.76□□□□□ -0.53
CUX1-210ENST00000497815 LRRC4CQ9HCJ2 640 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 RXFP3Q9NSD7 469 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 NINJ2Q9NZG7 142 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 VPS18Q9P253 973 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 APOBEC3BQ9UH17 382 aaKnown RBP11.76□□□□□ -0.53
CUX1-210ENST00000497815 PCYT1BQ9Y5K3 369 aaPredicted RBP11.76□□□□□ -0.53
CUX1-210ENST00000497815 SPAG17Q6Q759 2223 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 MUC6Q6W4X9 2439 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 UBA6A0AVT1 1052 aaPredicted RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 H3BM21 787 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 TNFRSF10CO14798 259 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 GRID2O43424 1007 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 NUAK1O60285 661 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 GFRA3O60609 400 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 DNAJC6O75061 913 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 LRP3O75074 770 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 PIAS1O75925 651 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 ACSL3O95573 720 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CER1O95813 267 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CSF2P04141 144 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 IVLP07476 585 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CTSEP14091 401 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 NME1P15531 152 aaKnown RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 TGM1P22735 817 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 TNFRSF8P28908 595 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 PBLDP30039 288 aaPredicted RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 PPARGP37231 505 aaPredicted RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 SLC1A2P43004 574 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 ARRB1P49407 418 aaPredicted RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 TTPAP49638 278 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 HK3P52790 923 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CTSCP53634 463 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 MPP1Q00013 466 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 MGAT5Q09328 741 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 BNIP3Q12983 259 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 C1orf61Q13536 156 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 SHBQ15464 509 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 PRRT3Q5FWE3 981 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 LYPLAL1Q5VWZ2 237 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 TMEM220Q6QAJ8 160 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CERS6Q6ZMG9 384 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 PRR23CQ6ZRP0 262 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CHST15Q7LFX5 561 aaPredicted RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 GALNT13Q8IUC8 556 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 OXR1Q8N573 874 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CLDN19Q8N6F1 224 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 BEND7Q8N7W2 519 aaPredicted RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 GPR150Q8NGU9 434 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 CALML6Q8TD86 181 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 LMX1AQ8TE12 382 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 OR2M4Q96R27 311 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 PARD6BQ9BYG5 372 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 TMEM168Q9H0V1 697 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 ERVMER34-1Q9H9K5 563 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 FBXO6Q9NRD1 293 aaPredicted RBP11.75□□□□□ -0.53
CUX1-210ENST00000497815 TM7SF3Q9NS93 570 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 FAM8A1Q9UBU6 413 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 PLEKHM1Q9Y4G2 1056 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 PRSS21Q9Y6M0 314 aa11.75□□□□□ -0.53
CUX1-210ENST00000497815 IGLV3-16A0A075B6K0 115 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 A0A1B0GTQ1 180 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 TCRBV9S1A1TA0A576 114 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 PFDN6O15212 129 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 CELA2BP08218 269 aaPredicted RBP11.74□□□□□ -0.53
CUX1-210ENST00000497815 ACP5P13686 325 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 ATP1B2P14415 290 aaPredicted RBP11.74□□□□□ -0.53
CUX1-210ENST00000497815 ZNF7P17097 686 aaPredicted RBP11.74□□□□□ -0.53
CUX1-210ENST00000497815 OGNP20774 298 aaKnown RBP11.74□□□□□ -0.53
CUX1-210ENST00000497815 NSG1P42857 185 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 ABCG1P45844 678 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 BLKP51451 505 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 HNRNPKP61978 463 aaKnown RBP eCLIP11.74□□□□□ -0.533e-7■■■■□ 23.8
CUX1-210ENST00000497815 ITIH4Q14624 930 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 SLMAPQ14BN4 828 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 INSCQ1MX18 579 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 UAP1L1Q3KQV9 507 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 PYCR3Q53H96 274 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 ZNF789Q5FWF6 425 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 LRRTM4Q86VH4 590 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 GATAD2AQ86YP4 633 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 CILP2Q8IUL8 1156 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 EIF1ADQ8N9N8 165 aaKnown RBP11.74□□□□□ -0.53
CUX1-210ENST00000497815 CCL4L1Q8NHW4 92 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 UHMK1Q8TAS1 419 aaKnown RBP11.74□□□□□ -0.53
CUX1-210ENST00000497815 FBF1Q8TES7 1133 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 HEXDCQ8WVB3 486 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 LRRC61Q9BV99 259 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 CLPBQ9H078 707 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 RMI1Q9H9A7 625 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 UCKL1Q9NWZ5 548 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 MOCS1Q9NZB8 636 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 ZFATQ9P243 1243 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 FBXO5Q9UKT4 447 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 DNAJC16Q9Y2G8 782 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 CRYL1Q9Y2S2 319 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 DGKBQ9Y6T7 804 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 PCDH15Q96QU1 1955 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 SDK1Q7Z5N4 2213 aa11.74□□□□□ -0.53
CUX1-210ENST00000497815 BPTFQ12830 3046 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms