RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZBTB8BQ8NAP8 495 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-215ENST00000496447 ATG10Q9H0Y0 220 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 TOR4AQ9NXH8 423 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 SAMHD1Q9Y3Z3 626 aaKnown RBP13.05□□□□□ -0.32
PTPRF-215ENST00000496447 CST1P01037 141 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 GPD2P43304 727 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 IL10RBQ08334 325 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 BNIP1Q12981 228 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 TAF5Q15542 800 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 FAM98AQ8NCA5 519 aaKnown RBP13.05□□□□□ -0.32
PTPRF-215ENST00000496447 TSTD1Q8NFU3 115 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 SH3RF2Q8TEC5 729 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 C5orf34Q96MH7 638 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 PACSIN3Q9UKS6 424 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 IGKV6D-41A0A0C4DH26 115 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 FZD9O00144 591 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 GNPDA1P46926 289 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 RAB30Q15771 203 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 TIGD5Q53EQ6 642 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 UBXN11Q5T124 520 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 GDF6Q6KF10 455 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-215ENST00000496447 IQCKQ8N0W5 287 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 FAM13CQ8NE31 585 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 BPIFB6Q8NFQ5 453 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 WFIKKN2Q8TEU8 576 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 MECRQ9BV79 373 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 LRTM1Q9HBL6 345 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 MOV10Q9HCE1 1003 aaKnown RBP13.05□□□□□ -0.32
PTPRF-215ENST00000496447 PRDM8Q9NQV8 689 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 C3orf18Q9UK00 162 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 SLC45A1Q9Y2W3 748 aa13.05□□□□□ -0.32
PTPRF-215ENST00000496447 PLIN4Q96Q06 1357 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 IL6P05231 212 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 RPIAP49247 311 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 ZIK1Q3SY52 487 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 TIGD2Q4W5G0 525 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 PERM1Q5SV97 790 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 SERPINA9Q86WD7 417 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 UNC5BQ8IZJ1 945 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 RCN3Q96D15 328 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 MIOSQ9NXC5 875 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 PRKAB1Q9Y478 270 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 TCAF1Q9Y4C2 921 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 ASLP04424 464 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 C2P06681 752 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 SLC35G6P0C7Q6 338 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 FSHRP23945 695 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 HNMTP50135 292 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 LDB1Q86U70 411 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 SLC43A3Q8NBI5 491 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 SPATA22Q8NHS9 363 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 PSMG2Q969U7 264 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 TUBGCP5Q96RT8 1024 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 FZD8Q9H461 694 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 NUDT4Q9NZJ9 180 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 ZNF37AP17032 561 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 DDI2Q5TDH0 399 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 POMZP3Q6PJE2 187 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 TMEM220Q6QAJ8 160 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 PEG10Q86TG7 708 aaKnown RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 RBM12BQ8IXT5 1001 aaKnown RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 OSBPL11Q9BXB4 747 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 H3BNX3 289 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 DHX15O43143 795 aaKnown RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 IPO13O94829 963 aaKnown RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 CLDN9O95484 217 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 SERPINA6P08185 405 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 BLKP51451 505 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 MAPK10P53779 464 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 PDCD4Q53EL6 469 aaKnown RBP13.04□□□□□ -0.32
PTPRF-215ENST00000496447 SPATA19Q7Z5L4 167 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 UBASH3BQ8TF42 649 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 B3GALT6Q96L58 329 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 PNPOQ9NVS9 261 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 PTGFRNQ9P2B2 879 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 SQORQ9Y6N5 450 aa13.04□□□□□ -0.32
PTPRF-215ENST00000496447 LOC100506127A0A0U1RQW1 187 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 A0A1W2PPM1 405 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 ECDO95905 644 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 COL6A2P12110 1019 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 CDKN2BP42772 138 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 FOXM1Q08050 763 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 RFTN2Q52LD8 501 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 ATXN7L2Q5T6C5 722 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 MZT2AQ6P582 158 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TEFMQ96QE5 360 aaKnown RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 FBXW11Q9UKB1 542 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 UGT1A5P35504 534 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 BROXQ5VW32 411 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 GALNT18Q6P9A2 607 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 OR10H5Q8NGA6 315 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 TFAP2BQ92481 460 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 XPNPEP1Q9NQW7 623 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 SPATA2Q9UM82 520 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 DNM1LO00429 736 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 DDX3YO15523 660 aaKnown RBP13.03□□□□□ -0.32
PTPRF-215ENST00000496447 GMFGO60234 142 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 MAGEA8P43361 318 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 ASMTP46597 345 aa13.03□□□□□ -0.32
PTPRF-215ENST00000496447 RHAGQ02094 409 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms