RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TUBA4AP68366 448 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 TRIP4Q15650 581 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 RBM23Q86U06 439 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 PHACTR4Q8IZ21 702 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 LEMD2Q8NC56 503 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 PAAF1Q9BRP4 392 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 SYT11Q9BT88 431 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 EIF2B3Q9NR50 452 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 COPG1Q9Y678 874 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 NEMP2A6NFY4 417 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 F8W810 466 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 G3V2T6 193 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 DDX5P17844 614 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 RHDQ02161 417 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 GLYATQ6IB77 296 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 DENND5AQ6IQ26 1287 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 LUZP2Q86TE4 346 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 FLCNQ8NFG4 579 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 SUSD3Q96L08 255 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 PPM1MQ96MI6 270 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 ADAMTS10Q9H324 1103 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 DNAJC25-GNG10A0A024R161 153 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 OR51F1A6NGY5 319 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 PORP16435 677 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 MOGQ16653 247 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 TSTD2Q5T7W7 516 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 CDH24Q86UP0 819 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 TMEM199Q8N511 208 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 FUBP3Q96I24 572 aaKnown RBP eCLIP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 NODALQ96S42 347 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 CYP2S1Q96SQ9 504 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 GPR21Q99679 349 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 IFT80Q9P2H3 777 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 DPP7Q9UHL4 492 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 TIMM22Q9Y584 194 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM25AB3EWG3 89 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM25CB3EWG5 89 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM25GB3EWG6 89 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 PSMD11O00231 422 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 HLA-DQB2P05538 268 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 PCLAFQ15004 111 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 GCNT7Q6ZNI0 430 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 GPRIN3Q6ZVF9 776 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 C11orf74Q86VG3 221 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM9CQ8IZT9 166 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 SPPL2AQ8TCT8 520 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 HAPLN3Q96S86 360 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 DUSP12Q9UNI6 340 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 TMED5Q9Y3A6 229 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 MARF1Q9Y4F3 1742 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 CITO14578 2027 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 K7EPI3 171 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 RGS14O43566 566 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 DENRO43583 198 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 PKMP14618 531 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 GJA5P36382 358 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 ALDH9A1P49189 494 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 LIPEQ05469 1076 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 ILF2Q12905 390 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 SIM2Q14190 667 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 FBXL22Q6P050 247 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 EPGNQ6UW88 154 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 CHST15Q7LFX5 561 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 FAR1Q8WVX9 515 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 C19orf60Q96EN9 201 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF696Q9H7X3 374 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 C8orf4Q9NR00 106 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 CARD8Q9Y2G2 431 aa16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 DDX60Q8IY21 1712 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-209ENST00000494080 SLX4Q8IY92 1834 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ANKRD33BA6NCL7 494 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 BBIP1A8MTZ0 92 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ULK1O75385 1050 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 RNASEH2AO75792 299 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TSPAN9O75954 239 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 RECQL5O94762 991 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FADS2O95864 444 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ANXA6P08133 673 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 FGF3P11487 239 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PRKCHP24723 683 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PIK3CGP48736 1102 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 CYP4F2P78329 520 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 CYP4F3Q08477 520 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ZFP69Q49AA0 526 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 OGFRL1Q5TC84 451 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PLPP4Q5VZY2 271 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 HEXDCQ8WVB3 486 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ESAMQ96AP7 390 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 HBEGFQ99075 208 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 CCSER2Q9H7U1 834 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 CNTN6Q9UQ52 1028 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 GON4LQ3T8J9 2241 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 TMEM233B4DJY2 109 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 PRMT5O14744 637 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 HTRA2O43464 458 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 GPIP06744 558 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 CYP2A6P11509 494 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 SLC1A2P43004 574 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 MAPK8P45983 427 aa16.16■□□□□ 0.18
CCDC88B-209ENST00000494080 ATP6V0D1P61421 351 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms