RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PPIL1Q9Y3C6 166 aa12.06□□□□□ -0.48
HDAC6-230ENST00000488543 PLXNB3Q9ULL4 1909 aa12.06□□□□□ -0.48
HDAC6-230ENST00000488543 KIAA1549LQ6ZVL6 1849 aa12.06□□□□□ -0.48
HDAC6-230ENST00000488543 MUC22E2RYF6 1773 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-230ENST00000488543 ANHXE9PGG2 379 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ZNF195O14628 629 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 MBTPS2O43462 519 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 MAGEC1O60732 1142 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 NDUFS3O75489 264 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ATP5BP06576 529 aaKnown RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ASGR2P07307 311 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 FMO4P31512 558 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 KPNA2P52292 529 aaKnown RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 PRKAA2P54646 552 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ACTR3P61158 418 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 FAM83EQ2M2I3 478 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ZRANB3Q5FWF4 1079 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 AGAP9Q5VTM2 703 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 IRGCQ6NXR0 463 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 NET1Q7Z628 596 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 TSPAN33Q86UF1 283 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 PPFIBP2Q8ND30 876 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 MAPK15Q8TD08 544 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 FNDC3AQ9Y2H6 1198 aaKnown RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 PKP3Q9Y446 797 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 C1orf232A0A0U1RR37 186 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 UBA6A0AVT1 1052 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 NPIPB15A6NHN6 443 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 GOLGA8CPA6NN73 597 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 NEMP1O14524 444 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 DCXO43602 365 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 OR1I1O60431 355 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 CLDN7O95471 211 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 POP4O95707 220 aaKnown RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 UGT2B4P06133 528 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ALOX15P16050 662 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 MSX2P35548 267 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ITPRIPL2Q3MIP1 535 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 CTSL3PQ5NE16 218 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 FAM91A1Q658Y4 838 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 TXNDC11Q6PKC3 985 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 HPS6Q86YV9 775 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 PLPP6Q8IY26 295 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ARHGAP24Q8N264 748 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 PAF1Q8N7H5 531 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ZNF781Q8N8C0 355 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 TERB1Q8NA31 727 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 SLC26A7Q8TE54 656 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 SGF29Q96ES7 293 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 C19orf43Q9BQ61 176 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 DRC3Q9H069 523 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 ZFYVE1Q9HBF4 777 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 NDE1Q9NXR1 346 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 DENND4AQ7Z401 1863 aa12.05□□□□□ -0.48
HDAC6-230ENST00000488543 NEMP2A6NFY4 417 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ZBTB14O43829 449 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 KAT7O95251 611 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CD1DP15813 335 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ZNF37AP17032 561 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 KCNC1P48547 511 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 TTPAP49638 278 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ATXN3P54252 364 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CACNG1Q06432 222 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CDC16Q13042 620 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CUL3Q13618 768 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ACAP2Q15057 778 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 SLC9B1Q4ZJI4 515 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CRTC1Q6UUV9 634 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 FRMD7Q6ZUT3 714 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ISCA2Q86U28 154 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 WDR75Q8IWA0 830 aaKnown RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 LSMEM2Q8N112 164 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 DEFB123Q8N688 67 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 PTERQ96BW5 349 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 MCCC1Q96RQ3 725 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 KCNK12Q9HB15 430 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 GALPQ9UBC7 116 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 APOBEC2Q9Y235 224 aaKnown RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 SRP72O76094 671 aaKnown RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 RHOBTB1O94844 696 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CHRNGP07510 517 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CTSLP07711 333 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 BPIP17213 487 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 TFEBP19484 476 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ATP5F1P24539 256 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 NNMTP40261 264 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 GALK1P51570 392 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 METAP1P53582 386 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 NAGLUP54802 743 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 DNAJB13P59910 316 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CCNIQ14094 377 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 CMPK2Q5EBM0 449 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 FAM151BQ6UXP7 276 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 MTSS1LQ765P7 747 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 PPP4R1Q8TF05 950 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 SREK1Q8WXA9 508 aaKnown RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 MARK4Q96L34 752 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 ZNF641Q96N77 438 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-230ENST00000488543 TSC22D3Q99576 134 aa12.04□□□□□ -0.48
HDAC6-230ENST00000488543 P2RY12Q9H244 342 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms