RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 NIPSNAP2O75323 286 aa14.5□□□□□ -0.09
HDAC6-220ENST00000477528 PRKCGP05129 697 aa14.5□□□□□ -0.09
HDAC6-220ENST00000477528 CD68P34810 354 aaPredicted RBP14.5□□□□□ -0.09
HDAC6-220ENST00000477528 RING1Q06587 406 aa14.5□□□□□ -0.09
HDAC6-220ENST00000477528 BROXQ5VW32 411 aa14.5□□□□□ -0.09
HDAC6-220ENST00000477528 ESAMQ96AP7 390 aa14.5□□□□□ -0.09
HDAC6-220ENST00000477528 PANX1Q96RD7 426 aa14.5□□□□□ -0.09
HDAC6-220ENST00000477528 RSL24D1Q9UHA3 163 aaKnown RBP14.5□□□□□ -0.09
HDAC6-220ENST00000477528 LY75O60449 1722 aa14.5□□□□□ -0.09
HDAC6-220ENST00000477528 NEDD8-MDP1E9PL57 170 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 SLC7A1P30825 629 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 CHST9Q7L1S5 443 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 PEX13Q92968 403 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 CLP1Q92989 425 aaKnown RBP14.49□□□□□ -0.09
HDAC6-220ENST00000477528 TOP1MTQ969P6 601 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 RANBP9Q96S59 729 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 TDRKHQ9Y2W6 561 aaKnown RBP14.49□□□□□ -0.09
HDAC6-220ENST00000477528 YIPF1Q9Y548 306 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 FADS3Q9Y5Q0 445 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 SNX8Q9Y5X2 465 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 KCNE2Q9Y6J6 123 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 SYNDIG1LA6NDD5 238 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 M0QZQ0 153 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 KDELR3O43731 214 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 FGF19O95750 216 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 T-ENOLP0DO92 83 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 PSMB9P28065 219 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ALDH9A1P49189 494 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 RPIAP49247 311 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ERVK-8P63133 956 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 RALGPS2Q86X27 583 aaPredicted RBP14.49□□□□□ -0.09
HDAC6-220ENST00000477528 TMCO5AQ8N6Q1 288 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ARNTL2Q8WYA1 636 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 PCDHAC1Q9H158 963 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 DNAJC11Q9NVH1 559 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 CORO2BQ9UQ03 480 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 NELFEP18615 380 aaKnown RBP14.49□□□□□ -0.09
HDAC6-220ENST00000477528 CCR10P46092 362 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 RUNX1T1Q06455 604 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 FAM171BQ6P995 826 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 C17orf99Q6UX52 265 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 LINC01465Q8N7H1 131 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ACDQ96AP0 544 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ZNF778Q96MU6 729 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 TSEN34Q9BSV6 310 aaKnown RBP14.49□□□□□ -0.09
HDAC6-220ENST00000477528 POLR1BQ9H9Y6 1135 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 POPDC3Q9HBV1 291 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 SUCOQ9UBS9 1254 aaKnown RBP14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ADGRE2Q9UHX3 823 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ENOPH1Q9UHY7 261 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 POU1F1P28069 291 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 PRMT2P55345 433 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 SNX20Q7Z614 316 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 CBR4Q8N4T8 237 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 LEMD2Q8NC56 503 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 SUSD6Q92537 303 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 HPS4Q9NQG7 708 aa14.49□□□□□ -0.09
HDAC6-220ENST00000477528 ETS2P15036 469 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 CSKP41240 450 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 MTTPP55157 894 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 DCTN2Q13561 401 aaKnown RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 PITRM1Q5JRX3 1037 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 INTS11Q5TA45 600 aaKnown RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 PIK3R6Q5UE93 754 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 SLC47A1Q96FL8 570 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 TSSK3Q96PN8 268 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 DERL2Q9GZP9 239 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 PCDH12Q9NPG4 1184 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 USE1Q9NZ43 259 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 MRPS23Q9Y3D9 190 aaKnown RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 LCHNA4D1U4 455 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 AQP12BA6NM10 295 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 ANKRD66B4E2M5 251 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 STX16-NPEPL1H3BU86 382 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 RFX4Q33E94 735 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 RNF19BQ6ZMZ0 732 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 DNAJB7Q7Z6W7 309 aaPredicted RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 AQP12AQ8IXF9 295 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 KIAA1191Q96A73 305 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 SCLYQ96I15 445 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 SPATA17Q96L03 361 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 TMLHEQ9NVH6 421 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 TBC1D14Q9P2M4 693 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 CLCA2Q9UQC9 943 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 FAM234BA2RU67 622 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 CNOT3O75175 753 aaKnown RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 LRATO95237 230 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 POP4O95707 220 aaKnown RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 GNRH1P01148 92 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 NTRK1P04629 796 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 RPL3P39023 403 aaKnown RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 NSG1P42857 185 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 GPR1P46091 355 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 DAB2P98082 770 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 POM121L1PQ3SYA9 428 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 TECRLQ5HYJ1 363 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 CLHC1Q8NHS4 586 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 UTP15Q8TED0 518 aaKnown RBP14.48□□□□□ -0.09
HDAC6-220ENST00000477528 FLRT1Q9NZU1 646 aa14.48□□□□□ -0.09
HDAC6-220ENST00000477528 HAS3O00219 553 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms