RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SHC3Q92529 594 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 NMUR2Q9GZQ4 415 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 ANXA2P2A6NMY6 339 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 SLC28A2O43868 658 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 ANXA2P07355 339 aaKnown RBP13.21□□□□□ -0.29
COL6A3-209ENST00000472056 SLC41A1Q8IVJ1 513 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 KAT2BQ92831 832 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 SLC38A4Q969I6 547 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 TKTL2Q9H0I9 626 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 DNMT3LQ9UJW3 386 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 PTPRJQ12913 1337 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 FPGTO14772 594 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 TPTEP56180 551 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 CDC42EP5Q6NZY7 148 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 AMIGO2Q86SJ2 522 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 SCUBE3Q8IX30 993 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 TCEAL7Q9BRU2 100 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 CHST7Q9NS84 486 aa13.21□□□□□ -0.29
COL6A3-209ENST00000472056 XYLBO75191 536 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 ASGR1P07306 291 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 SLC1A2P43004 574 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 TMBIM6P55061 237 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 USP30Q70CQ3 517 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 OTOP1Q7RTM1 612 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 THAP6Q8TBB0 222 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF570Q96NI8 536 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 SLC30A2Q9BRI3 323 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 BHLHE41Q9C0J9 482 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-209ENST00000472056 PLEKHA1Q9HB21 404 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 ATRNO75882 1429 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 TNFRSF11BO00300 401 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 MYCP01106 439 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-209ENST00000472056 APLP1P51693 650 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 TAS2R43P59537 309 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 PARP15Q460N3 678 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 PSKH2Q96QS6 385 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 MMP27Q9H306 513 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 HHATLQ9HCP6 504 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 SPG21Q9NZD8 308 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 DNAJB9Q9UBS3 223 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 PARP4Q9UKK3 1724 aaKnown RBP13.21□□□□□ -0.3
COL6A3-209ENST00000472056 GRIN2DO15399 1336 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 CHKAP35790 457 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 BACE1P56817 501 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 SRSF11Q05519 484 aaKnown RBP13.21□□□□□ -0.3
COL6A3-209ENST00000472056 ADGRD2Q7Z7M1 963 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 CMTR2Q8IYT2 770 aaKnown RBP13.21□□□□□ -0.3
COL6A3-209ENST00000472056 FITM2Q8N6M3 262 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 OR52K2Q8NGK3 314 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 DCAKDQ8WVC6 231 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 ELL3Q9HB65 397 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-209ENST00000472056 ZFP14Q9HCL3 533 aa13.21□□□□□ -0.3
COL6A3-209ENST00000472056 ADAMTS13Q76LX8 1427 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 PRORSD1PA6NEY8 169 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 CLDN9O95484 217 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 TIGD6Q17RP2 521 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 AHSA2Q719I0 299 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 TMEM161BQ8NDZ6 487 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 AP2M1Q96CW1 435 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 PNMA5Q96PV4 448 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 LGR4Q9BXB1 951 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 MIOSQ9NXC5 875 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 MARCH2Q9P0N8 246 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 TRPV2Q9Y5S1 764 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 ARHGAP23Q9P227 1491 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 SATL1Q86VE3 508 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 RASGEF1AQ8N9B8 481 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 PNLDC1Q8NA58 520 aaKnown RBP13.2□□□□□ -0.3
COL6A3-209ENST00000472056 PORCNQ9H237 461 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 PRRC2BQ5JSZ5 2229 aaKnown RBP13.2□□□□□ -0.3
COL6A3-209ENST00000472056 GTPBP1O00178 669 aaKnown RBP13.2□□□□□ -0.3
COL6A3-209ENST00000472056 SAGP10523 405 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-209ENST00000472056 IGFALSP35858 605 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 DCLRE1AQ6PJP8 1040 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 SPATA20Q8TB22 786 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF358Q9NW07 568 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 DIP2BQ9P265 1576 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 ILVBLA1L0T0 632 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 LYPLA1O75608 230 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-209ENST00000472056 ATP5C1P36542 298 aaKnown RBP13.2□□□□□ -0.3
COL6A3-209ENST00000472056 PDX1P52945 283 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 MFSD10Q14728 455 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 USP41Q3LFD5 358 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 RNF44Q7L0R7 432 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 EIF3KQ9UBQ5 218 aaKnown RBP13.2□□□□□ -0.3
COL6A3-209ENST00000472056 GTF2A2P52657 109 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 CHCHD4Q8N4Q1 142 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 NXPE2Q96DL1 559 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 ASB8Q9H765 288 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 SLCO1B3Q9NPD5 702 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 MON2Q7Z3U7 1717 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 PTPRMP28827 1452 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 TRIM64CA6NLI5 447 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 GTF2BQ00403 316 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 SLC44A3Q8N4M1 653 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 ARRDC4Q8NCT1 418 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 CCDC54Q8NEL0 328 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 TOR1AIP2Q8NFQ8 470 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 OR52K1Q8NGK4 314 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 SNX33Q8WV41 574 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms