RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	RNF113B	Q8IZP6	322 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GUF1	Q8N442	669 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	AVL9	Q8NBF6	648 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GSDMB	Q8TAX9	411 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	UTP15	Q8TED0	518 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ABTB1	Q969K4	478 aa	Predicted RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	PIGT	Q969N2	578 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF622	Q969S3	477 aa	Known RBP eCLIP	3.75	□□□□□ -1.81	9e-19	■■□□□ 11.8
PTCD3-209	ENST00000472044	TMCO6	Q96DC7	493 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	RTP4	Q96DX8	246 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	MARK4	Q96L34	752 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GCNA	Q96QF7	691 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLC22A12	Q96S37	553 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	SEMA3C	Q99985	751 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZPBP	Q9BS86	351 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	CENPO	Q9BU64	300 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	TXLNGY	Q9BZA5	131 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	RTN4R	Q9BZR6	473 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	TM6SF1	Q9BZW5	370 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	SPATC1L	Q9H0A9	340 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	PPIL3	Q9H2H8	161 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	MMP27	Q9H306	513 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	KCNK15	Q9H427	330 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLC35C2	Q9NQQ7	365 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	RCC2	Q9P258	522 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GAGE2D	Q9UEU5	116 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	TSPYL4	Q9UJ04	414 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF148	Q9UQR1	794 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	AMDHD2	Q9Y303	409 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	TNFRSF18	Q9Y5U5	241 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	MAGED1	Q9Y5V3	778 aa	Predicted RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	FAM169A	Q9Y6X4	670 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	MAGEA13P	A6NCF6	341 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	LACTBL1	A8MY62	500 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF587B	E7ETH6	402 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	KCNAB3	O43448	404 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	CAMTA2	O94983	1202 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	DNTT	P04053	509 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	SNHG28	P0DPA3	235 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	KCNA5	P22460	613 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	CCKBR	P32239	447 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	KRT20	P35900	424 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	TMPO	P42166	694 aa	Known RBP	3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	TMF1	P82094	1093 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZXDB	P98169	803 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	MEP1A	Q16819	746 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	KIF19	Q2TAC6	998 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF704	Q6ZNC4	412 aa	Predicted RBP	3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044		Q75L30	129 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	INTS8	Q75QN2	995 aa	Known RBP	3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	LDB1	Q86U70	411 aa	Predicted RBP	3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	SATL1	Q86VE3	508 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	POMGNT2	Q8NAT1	580 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	HMGCLL1	Q8TB92	370 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	DUSP19	Q8WTR2	217 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	BICD1	Q96G01	975 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	ADGRG7	Q96K78	797 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	ABHD1	Q96SE0	405 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	PCYT2	Q99447	389 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	WAC	Q9BTA9	647 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLCO5A1	Q9H2Y9	848 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	RAD21L1	Q9H4I0	556 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	DNAJC18	Q9H819	358 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	EBF2	Q9HAK2	575 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	GDE1	Q9NZC3	331 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	CPSF2	Q9P2I0	782 aa	Known RBP	3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	LARS	Q9P2J5	1176 aa	Known RBP	3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	VDAC3	Q9Y277	283 aa		3.74	□□□□□ -1.81
PTCD3-209	ENST00000472044	CGNL1	Q0VF96	1302 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	MAGEB17	A8MXT2	336 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044		J3QR06	171 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	NDUFS4	O43181	175 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	PPP1R3D	O95685	299 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	MYOD1	P15172	320 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	USP8	P40818	1118 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	PDLIM4	P50479	330 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	EEF1A1	P68104	462 aa	Known RBP	3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLC20A2	Q08357	652 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SNTA1	Q13424	505 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	KEAP1	Q14145	624 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF234	Q14588	700 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SF3B4	Q15427	424 aa	Known RBP eCLIP	3.73	□□□□□ -1.81	4e-16	■■□□□ 13.2
PTCD3-209	ENST00000472044	EEF1A1P5	Q5VTE0	462 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZDHHC20	Q5W0Z9	365 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLC30A6	Q6NXT4	461 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	RPUSD3	Q6P087	351 aa	Known RBP	3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	GFRAL	Q6UXV0	394 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	HAUS6	Q7Z4H7	955 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	ADIPOR2	Q86V24	386 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	TMEM219	Q86XT9	240 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	GALNT13	Q8IUC8	556 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLC5A8	Q8N695	610 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	POGLUT1	Q8NBL1	392 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SMRP1	Q8NCR6	262 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	MCU	Q8NE86	351 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	APPL2	Q8NEU8	664 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	LILRB1	Q8NHL6	650 aa	Predicted RBP	3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	LNX1	Q8TBB1	728 aa	Predicted RBP	3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLC20A1	Q8WUM9	679 aa		3.73	□□□□□ -1.81
PTCD3-209	ENST00000472044	SLC44A1	Q8WWI5	657 aa		3.73	□□□□□ -1.81

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