RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 NET1Q7Z628 596 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-205ENST00000466192 SNX32Q86XE0 403 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 CPSF7Q8N684 471 aaKnown RBP18.08■□□□□ 0.48
COL9A3-205ENST00000466192 CLDN19Q8N6F1 224 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 ST13P5Q8NFI4 369 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-205ENST00000466192 CEP70Q8NHQ1 597 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 GDPD5Q8WTR4 605 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 MIEF2Q96C03 454 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 FAR2Q96K12 515 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 ZFYVE19Q96K21 471 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 CIPCQ9C0C6 399 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 CLPBQ9H078 707 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 MTG2Q9H4K7 406 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 CDH22Q9UJ99 828 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 C15orf41Q9Y2V0 281 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 TRAF6Q9Y4K3 522 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 PRSS21Q9Y6M0 314 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 WASF2Q9Y6W5 498 aa18.08■□□□□ 0.48
COL9A3-205ENST00000466192 RGSL1A5PLK6 1076 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 SUPT3HB4E1H0 165 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 SUPT3HO75486 399 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 PSMG1O95456 288 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 THRAP10827 490 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 RPS3P23396 243 aaKnown RBP eCLIP18.07■□□□□ 0.481e-14■■□□□ 13.8
COL9A3-205ENST00000466192 RECQLP46063 649 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 SESN3P58005 492 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 C6orf163Q5TEZ5 329 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 C1orf146Q5VVC0 180 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 RBFAQ8N0V3 343 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 DTX3LQ8TDB6 740 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 RTKNQ9BST9 563 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 SFXN1Q9H9B4 322 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 MEAF6Q9HAF1 191 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 B4GALT6Q9UBX8 382 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 CRLS1Q9UJA2 301 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 DHRS7Q9Y394 339 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 COPG1Q9Y678 874 aaKnown RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 PPP6CO00743 305 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 AIM2O14862 343 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 HOXC11O43248 304 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 MESP2Q0VG99 397 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 TRMT5Q32P41 509 aaKnown RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 GPR33Q49SQ1 333 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 FBXO48Q5FWF7 155 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 PTRHD1Q6GMV3 140 aaKnown RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 RAB44Q7Z6P3 723 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 CFAP61Q8NHU2 1237 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 LKAAEAR1Q8TD35 194 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 N4BP2L2Q92802 583 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 ASB16Q96NS5 453 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 HEPHQ9BQS7 1158 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 PBX4Q9BYU1 374 aa18.07■□□□□ 0.48
COL9A3-205ENST00000466192 TCF20Q9UGU0 1960 aaKnown RBP18.07■□□□□ 0.48
COL9A3-205ENST00000466192 AGAP14A8MT82 685 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 LEFTY1O75610 366 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 PDE5AO76074 875 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 SORBS2O94875 1100 aaKnown RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 C1SP09871 688 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NNMTP40261 264 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 PTDSS1P48651 473 aaKnown RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 SH3BP2P78314 561 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 SATB1Q01826 763 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 CYLC2Q14093 348 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 PPP1R3AQ16821 1122 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 UGT3A1Q6NUS8 523 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NXPE1Q8N323 547 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 FBXO39Q8N4B4 442 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 ACTRT2Q8TDY3 377 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 FGF13Q92913 245 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NSUN5Q96P11 429 aaKnown RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 TTC1Q99614 292 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 APOL5Q9BWW9 433 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 ZBTB26Q9HCK0 441 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 DOCK8Q8NF50 2099 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 A0A1W2PQ67 120 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 OTOL1A6NHN0 477 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 EPOPA6NHQ4 379 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NCF1BA6NI72 391 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NCF1CA8MVU1 366 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 TULP3O75386 442 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 ADH1CP00326 375 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 CTSLP07711 333 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NCF1P14598 390 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 ITGB6P18564 788 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NUDT2P50583 147 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 PTPN5P54829 565 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 CCDC6Q16204 474 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 ARSIQ5FYB1 569 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 EFCAB3Q8N7B9 438 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 KIAA1958Q8N8K9 716 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 RP9Q8TA86 221 aaKnown RBP18.06■□□□□ 0.48
COL9A3-205ENST00000466192 BPIFB1Q8TDL5 484 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 PBXIP1Q96AQ6 731 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 NKX2-4Q9H2Z4 354 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 EBF3Q9H4W6 596 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 MID1IP1Q9NPA3 183 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 GNPTGQ9UJJ9 305 aa18.06■□□□□ 0.48
COL9A3-205ENST00000466192 KIF26AQ9ULI4 1882 aaPredicted RBP18.05■□□□□ 0.48
COL9A3-205ENST00000466192 SYCE1LA8MT33 242 aa18.05■□□□□ 0.48
COL9A3-205ENST00000466192 CDK14O94921 469 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms