RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FAM220AQ7Z4H9 259 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 BRD9Q9H8M2 597 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TIMM22Q9Y584 194 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CNTNAP1P78357 1384 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TP73O15350 636 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 FKTNO75072 461 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CLDN11O75508 207 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CDH1P12830 882 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CACNG1Q06432 222 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 SMARCB1Q12824 385 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CMPK2Q5EBM0 449 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 PRR23BQ6ZRT6 265 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 CCDC59Q9P031 241 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TEX264Q9Y6I9 313 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 STON1Q9Y6Q2 735 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 PIK3C2AO00443 1686 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TNFRSF11BO00300 401 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 BMP7P18075 431 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 NDST2P52849 883 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 HKDC1Q2TB90 917 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 USP43Q70EL4 1123 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 FAM20CQ8IXL6 584 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 PPP1R13LQ8WUF5 828 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 TIFAQ96CG3 184 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 ERLEC1Q96DZ1 483 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 PPP1R16AQ96I34 528 aa18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 PDGFDQ9GZP0 370 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-204ENST00000463837 RICTORQ6R327 1708 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 E9PAM4 449 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 CLDN9O95484 217 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 ACADVLP49748 655 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 UBE2R2Q712K3 238 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 DNAJC11Q9NVH1 559 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 COMMD9Q9P000 198 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 TMEM9Q9P0T7 183 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 AKAP12Q02952 1782 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 OR6C75A6NL08 312 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 CASKO14936 926 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 DAG1Q14118 895 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 SMYD5Q6GMV2 418 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 LIN54Q6MZP7 749 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 ESRP1Q6NXG1 681 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 KRT77Q7Z794 578 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 OR4K2Q8NGD2 314 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 GPR21Q99679 349 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 KIFC1Q9BW19 673 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 LRRC3Q9BY71 257 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 EHD1Q9H4M9 534 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 PEAK1Q9H792 1746 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 LMO7Q8WWI1 1683 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 FAM240BA0A1B0GVZ2 78 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 KPNA3O00505 521 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 FPGTO14772 594 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 STK16O75716 305 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 METTL18O95568 372 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 TLX1P31314 330 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 MBTD1Q05BQ5 628 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 CNSTQ6PJW8 725 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 EPGNQ6UW88 154 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 DENND1CQ8IV53 801 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 DAW1Q8N136 415 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 IPPKQ9H8X2 491 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 AP3D1O14617 1153 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 PGRMC2O15173 223 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 UGT1A9O60656 530 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 FNDC3BQ53EP0 1204 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 AHSA2Q719I0 299 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 MYO19Q96H55 970 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 HIPK3Q9H422 1215 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 TFB2MQ9H5Q4 396 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 UGT1A7Q9HAW7 530 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 UGT1A10Q9HAW8 530 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 UGT1A8Q9HAW9 530 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 TBCCD1Q9NVR7 557 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 WDR37Q9Y2I8 494 aa18.84■□□□□ 0.61
CCDC88B-204ENST00000463837 CXCR6O00574 342 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 ITM2AO43736 263 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 RPLP0P05388 317 aaKnown RBP18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 BCAP31P51572 246 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 TAS2R39P59534 338 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 C10orf71Q711Q0 1435 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 RASAL3Q86YV0 1011 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 DENND6AQ8IWF6 608 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 ZBTB2Q8N680 514 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 TTC29Q8NA56 475 aaPredicted RBP18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 TSSK3Q96PN8 268 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 PHF11Q9UIL8 331 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 FADS2P1A8MWK0 482 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 IMPDH1P20839 514 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 PFKPQ01813 784 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 CLEC4DQ8WXI8 215 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 XPNPEP1Q9NQW7 623 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 EVA1BQ9NVM1 165 aa18.83■□□□□ 0.61
CCDC88B-204ENST00000463837 FANCGO15287 622 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 TBL1XO60907 577 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 UGT2B17O75795 530 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 PRKCHP24723 683 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 PHF12Q96QT6 1004 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 TM6SF2Q9BZW4 377 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms