RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LRRC73Q5JTD7 316 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 SYTL1Q8IYJ3 562 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 ANKRD49Q8WVL7 239 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 COPS8Q99627 209 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CPQQ9Y646 472 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 U3KQV3 271 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 SSC5DA1L4H1 1573 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 GREB1LQ9C091 1923 aaPredicted RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 QSER1Q2KHR3 1735 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 TNS1Q9HBL0 1735 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 PDLIM1O00151 329 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 LZTS3O60299 673 aaPredicted RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 GJB5O95377 273 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 MTHFD1P11586 935 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 SNRPD1P62314 119 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 SMARCB1Q12824 385 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 MAD2L1Q13257 205 aaPredicted RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 GLYATQ6IB77 296 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 FAM171BQ6P995 826 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 USP45Q70EL2 814 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 ATG16L2Q8NAA4 619 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 TMEM159Q96B96 161 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 PPP3R2Q96LZ3 170 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CFAP97Q9P2B7 532 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CIDEBQ9UHD4 219 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 FBXL21Q9UKT6 434 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CEP350Q5VT06 3117 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 BBIP1A8MTZ0 92 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 RNASEH1O60930 286 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 JUNP05412 331 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 UGT2B4P06133 528 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CDH2P19022 906 aaPredicted RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 PRIM2P49643 509 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CDKN2DP55273 166 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 GPR17Q13304 367 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CES5AQ6NT32 575 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 SERPINA9Q86WD7 417 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 PDSS2Q86YH6 399 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 P3H2Q8IVL5 708 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 DGCR14Q96DF8 476 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 ALG2Q9H553 416 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 CACYBPQ9HB71 228 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 FAM32AQ9Y421 112 aaKnown RBP11.53□□□□□ -0.56
NPHP4-204ENST00000460696 TRIP11Q15643 1979 aa11.53□□□□□ -0.56
NPHP4-204ENST00000460696 GRID2O43424 1007 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 ARHGAP15Q53QZ3 475 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 ACBD5Q5T8D3 534 aaPredicted RBP11.52□□□□□ -0.56
NPHP4-204ENST00000460696 OFCC1Q8IZS5 231 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 KDM1BQ8NB78 822 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 OR52E6Q96RD3 313 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 AARSD1Q9BTE6 412 aaKnown RBP11.52□□□□□ -0.56
NPHP4-204ENST00000460696 UGT2B28Q9BY64 529 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 KATNBL1Q9H079 304 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 POLR1BQ9H9Y6 1135 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 CACNA2D2Q9NY47 1150 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 CNOT1A5YKK6 2376 aaKnown RBP11.52□□□□□ -0.56
NPHP4-204ENST00000460696 FOCADQ5VW36 1801 aa11.52□□□□□ -0.56
NPHP4-204ENST00000460696 MYOCOSA0A1B0GUC4 107 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 TMEM247A6NEH6 219 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 S1PR4O95977 384 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 UROSP10746 265 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 CYP2A7P20853 494 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 LEPRP48357 1165 aaKnown RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 AGTR2P50052 363 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 RAD23AP54725 363 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 CREB5Q02930 508 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 GPM6BQ13491 265 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 TAF1AQ15573 450 aaPredicted RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ADGRF1Q5T601 910 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 C11orf96Q7Z7L8 435 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 NAT16Q8N8M0 369 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 EEF1AKMT1Q8WVE0 214 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ELMO1Q92556 727 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 NT5C3BQ969T7 300 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ASB9Q96DX5 294 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 SPATA17Q96L03 361 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 TFB2MQ9H5Q4 396 aaKnown RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 PNPLA3Q9NST1 481 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 COMMD3-BMI1R4GMX3 469 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 GLYATL1P3A0A0U1RQE8 302 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 SYNDIG1LA6NDD5 238 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ANKRD66B4E2M5 251 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 M0R3G1 203 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 PRAMEF11O60813 436 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 LINGO3P0C6S8 592 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 GLDCP23378 1020 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 GABRB3P28472 473 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 STC1P52823 247 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 DIO3P55073 304 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ACSM2AQ08AH3 577 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 HERC3Q15034 1050 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF678Q5SXM1 525 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ACSM2BQ68CK6 577 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 TXNDC8Q6A555 127 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 SYT12Q8IV01 421 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 TPD52L3Q96J77 140 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 C1orf74Q96LT6 269 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 MRPS26Q9BYN8 205 aaKnown RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 RAB26Q9ULW5 256 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms