RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 EFCAB8A8MWE9 144 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 H3BS24 57 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SNAP23O00161 211 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NRG2O14511 850 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ATP2A1O14983 1001 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SMAD9O15198 467 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MATN3O15232 486 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 EIF3HO15372 352 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DAPK3O43293 454 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 AP5Z1O43299 807 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PPIP5K2O43314 1243 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NOBOXO60393 691 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SPDEFO95238 335 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 IL18RAPO95256 599 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MLYCDO95822 493 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DHFRP00374 187 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 HMGCRP04035 888 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TUBB4AP04350 444 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ZCCHC18P0CG32 403 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ARP10275 920 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NCF1P14598 390 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DARSP14868 501 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TACR1P25103 407 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CASP14P31944 242 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 RCVRNP35243 200 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MAGEA4P43358 317 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KIR3DL2P43630 455 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CAPZA2P47755 286 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GMPSP49915 693 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 RIDAP52758 137 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM189BP81408 668 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CYP27A1Q02318 531 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GRIN1Q05586 938 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ABRQ12979 859 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ART3Q13508 389 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DCTN2Q13561 401 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 DDX39BQ13838 428 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT31Q15323 416 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KCNJ8Q15842 424 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM187BQ17R55 369 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GPAT3Q53EU6 434 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 C3orf38Q5JPI3 329 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT79Q5XKE5 535 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KIAA1161Q6NSJ0 714 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TRAT1Q6PIZ9 186 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 KLHL24Q6TFL4 600 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 LAYNQ6UX15 382 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TAF8Q7Z7C8 310 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GPR149Q86SP6 731 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PATL1Q86TB9 770 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 PRUNE1Q86TP1 453 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM217AQ8IXS0 508 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 ZDHHC14Q8IZN3 488 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 IQCKQ8N0W5 287 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SFRP1Q8N474 314 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MINDY1Q8N5J2 469 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 LEMD2Q8NC56 503 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 BBS10Q8TAM1 723 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC20A1Q8WUM9 679 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CLEC4DQ8WXI8 215 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 VPS33AQ96AX1 596 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NSUN4Q96CB9 384 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MAP6Q96JE9 813 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 C7orf26Q96N11 449 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 BBS4Q96RK4 519 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MMS19Q96T76 1030 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CENPKQ9BS16 269 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CLPBQ9H078 707 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 BTBD1Q9H0C5 482 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NDST4Q9H3R1 872 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GREM2Q9H772 168 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 CNTD2Q9H8S5 307 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 GBA2Q9HCG7 927 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 S100A14Q9HCY8 104 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM184CQ9NVA4 438 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SMPD3Q9NY59 655 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 SELENONQ9NZV5 590 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 MRPS2Q9Y399 296 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 TAF1P21675 1872 aa4.78□□□□□ -1.64
CCDC88A-209ENST00000456975 NRCAMQ92823 1304 aa4.78□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM95CA0A1B0GW59 222 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 HMX3A6NHT5 357 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 LRRC37AA6NMS7 1700 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TOR1AO14656 332 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 KIAA0391O15091 583 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 B4GAT1O43505 415 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MED7O43513 233 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TBX10O75333 385 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FTCDO95954 541 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 INHBAP08476 426 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CYP21A2P08686 494 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 STSP08842 583 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RNF224P0DH78 156 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC2A3P11169 496 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ITGB6P18564 788 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TYMPP19971 482 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CHMP24386 653 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 RPA1P27694 616 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TNFRSF8P28908 595 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 OXTRP30559 389 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms