RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ZC3HAV1LQ96H79 300 aaKnown RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 FIZ1Q96SL8 496 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 PAFAH2Q99487 392 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 TUBB6Q9BUF5 446 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 KIFC3Q9BVG8 833 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 CCDC106Q9BWC9 280 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 OPA3Q9H6K4 179 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 BPIFA1Q9NP55 256 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 SETD4Q9NVD3 440 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 MSRB1Q9NZV6 116 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 WDR35Q9P2L0 1181 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 RASAL2Q9UJF2 1139 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ANAPC5Q9UJX4 755 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 R3HDM2Q9Y2K5 976 aaKnown RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 ZNF142P52746 1687 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 C1orf167Q5SNV9 1468 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 DPPA5A6NC42 116 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 URADA6NGE7 173 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 LRRC72A6NJI9 287 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 KLRF2D3W0D1 207 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 MITFO75030 526 aaPredicted RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 AVILO75366 819 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 GPC4O75487 556 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 PSMD10O75832 226 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 TMCC1O94876 653 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 SYF2O95926 243 aaKnown RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 LCKP06239 509 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 NGFRP08138 427 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CCDC175P0C221 793 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 MYL6BP14649 208 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 IFNAR1P17181 557 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 PON1P27169 355 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 HSPA4P34932 840 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CENPAP49450 140 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CLCN3P51790 818 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CLCN5P51795 746 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CLCNKBP51801 687 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 ZXDBP98169 803 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 TFAP4Q01664 338 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 SLC18A2Q05940 514 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 PPATQ06203 517 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 ACSM2AQ08AH3 577 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 HYAL1Q12794 435 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 SLC39A6Q13433 755 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 PKP1Q13835 747 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 SHBQ15464 509 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 ADIPOQQ15848 244 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CDC37Q16543 378 aaPredicted RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 ZNF628Q5EBL2 1059 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 KIAA1755Q5JYT7 1200 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 TBC1D9BQ66K14 1250 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 ACSM2BQ68CK6 577 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 PMS2CLQ68D20 193 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 LRRC8EQ6NSJ5 796 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 AAGABQ6PD74 315 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 USP43Q70EL4 1123 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CHST3Q7LGC8 479 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CCDC186Q7Z3E2 898 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 TRIM74Q86UV6 250 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 TRIM73Q86UV7 250 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 ERC1Q8IUD2 1116 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 THNSL1Q8IYQ7 743 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 MINDY1Q8N5J2 469 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 MCUQ8NE86 351 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 SIPA1Q96FS4 1042 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 GBP5Q96PP8 586 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 C1QTNF1Q9BXJ1 281 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 MRPL1Q9BYD6 325 aaKnown RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 PANK2Q9BZ23 570 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 ANKRD2Q9GZV1 360 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 IL25Q9H293 177 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 ACTR5Q9H9F9 607 aaPredicted RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 XAB2Q9HCS7 855 aaKnown RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 PFDN4Q9NQP4 134 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 HYPKQ9NX55 129 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 PADI1Q9ULC6 663 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CMAHPQ9Y471 501 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CEPT1Q9Y6K0 416 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 DDX49Q9Y6V7 483 aaKnown RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 ADAMTSL3P82987 1691 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 OVOS2A0A0G2JMS6 1433 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 CHD2O14647 1828 aaKnown RBP4.18□□□□□ -1.74
VPS29-202ENST00000447578 FLT1P17948 1338 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 TTC41PQ6P2S7 1318 aa4.18□□□□□ -1.74
VPS29-202ENST00000447578 LTN1O94822 1766 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 A0A096LPK6 155 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.17□□□□□ -1.74
VPS29-202ENST00000447578 A6NL46 340 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 ERVV-2B6SEH9 535 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 EBAG9O00559 213 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 ATP2C2O75185 946 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 TGDSO95455 350 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 TRIM21P19474 475 aaKnown RBP4.17□□□□□ -1.74
VPS29-202ENST00000447578 TFEBP19484 476 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 CPT2P23786 658 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 TNFRSF8P28908 595 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 CIITAP33076 1130 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 RYKP34925 604 aa4.17□□□□□ -1.74
VPS29-202ENST00000447578 RFC1P35251 1148 aaPredicted RBP4.17□□□□□ -1.74
VPS29-202ENST00000447578 PNLIPRP2P54317 469 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms