RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SLC23A3Q6PIS1 610 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 MARK2Q7KZI7 788 aaKnown RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 GALNT7Q86SF2 657 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 PARGQ86W56 976 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 LRRC6Q86X45 466 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 SPATS2Q86XZ4 545 aaKnown RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 MREGQ8N565 214 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 PPM1NQ8N819 430 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 RASGEF1AQ8N9B8 481 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 HNRNPLLQ8WVV9 542 aaKnown RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 SCARF2Q96GP6 870 aaPredicted RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 ZNF514Q96K75 400 aaPredicted RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 BOCQ9BWV1 1114 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 CLPBQ9H078 707 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 EPB41L4BQ9H329 900 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 FGF22Q9HCT0 170 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 FBXO6Q9NRD1 293 aaPredicted RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 TXNDC16Q9P2K2 825 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 TDRD6O60522 2096 aaKnown RBP15.58■□□□□ 0.09
USP40-206ENST00000443711 UBA6A0AVT1 1052 aaPredicted RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 PRSS38A1L453 326 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 QSOX1O00391 747 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 CHUKO15111 745 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 OR1I1O60431 355 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 HAUS5O94927 633 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 RASGRP1O95267 797 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 TNFP01375 233 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 LMNAP02545 664 aaKnown RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 AHSGP02765 367 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 RPS3P23396 243 aaKnown RBP eCLIP15.58■□□□□ 0.08
USP40-206ENST00000443711 HSD17B3P37058 310 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 CTSKP43235 329 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 MPP1Q00013 466 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 PPARDQ03181 441 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 ILF2Q12905 390 aaKnown RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 EIF2B5Q13144 721 aaKnown RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 UAP1Q16222 522 aaPredicted RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 ALG11Q2TAA5 492 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 KIF19Q2TAC6 998 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 TRIM61Q5EBN2 209 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 TMEM220Q6QAJ8 160 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 RD3Q7Z3Z2 195 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 STRA8Q7Z7C7 330 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 OR1E3Q8WZA6 343 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 LPGAT1Q92604 370 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 TSACCQ96A04 125 aaPredicted RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 SGF29Q96ES7 293 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 NUSAP1Q9BXS6 441 aaKnown RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 P2RY12Q9H244 342 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 ERVMER34-1Q9H9K5 563 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 CAPN10Q9HC96 672 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 CYP4F12Q9HCS2 524 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 ARGLU1Q9NWB6 273 aaPredicted RBP15.58■□□□□ 0.08
USP40-206ENST00000443711 SLC17A6Q9P2U8 582 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 ZNHIT2Q9UHR6 403 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 GPR34Q9UPC5 381 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 CRYL1Q9Y2S2 319 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 PCDHB1Q9Y5F3 818 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 DGKBQ9Y6T7 804 aa15.58■□□□□ 0.08
USP40-206ENST00000443711 LRP4O75096 1905 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 H3BMM5 538 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 KHNYNO15037 678 aaKnown RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 KMOO15229 486 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 GRID2O43424 1007 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 DNAJC6O75061 913 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 PIAS1O75925 651 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 ESR1P03372 595 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 OR56A5P0C7T3 313 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 FMO4P31512 558 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 CD151P48509 253 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 BLKP51451 505 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 CSE1LP55060 971 aaKnown RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 ADARP55265 1226 aaKnown RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 EIF3BP55884 814 aaKnown RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 ZNF789Q5FWF6 425 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 PLA2G2CQ5R387 149 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 PTRHD1Q6GMV3 140 aaKnown RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 CNSTQ6PJW8 725 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 DET1Q7L5Y6 550 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 LRRTM4Q86VH4 590 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 GALNT13Q8IUC8 556 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 TRAPPC5Q8IUR0 188 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 HID1Q8IV36 788 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 OXR1Q8N573 874 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 CLDN19Q8N6F1 224 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 CCDC97Q96F63 343 aaPredicted RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 CPNE1Q99829 537 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 ZDHHC5Q9C0B5 715 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 CCDC68Q9H2F9 335 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 CARS2Q9HA77 564 aaKnown RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 MRPL40Q9NQ50 206 aaKnown RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 GNPTGQ9UJJ9 305 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 CORO1CQ9ULV4 474 aaPredicted RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 SUFUQ9UMX1 484 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 SNX11Q9Y5W9 270 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 PSAT1Q9Y617 370 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 COMMD10Q9Y6G5 202 aa15.57■□□□□ 0.08
USP40-206ENST00000443711 DNMT3AQ9Y6K1 912 aaPredicted RBP15.57■□□□□ 0.08
USP40-206ENST00000443711 ADAMTS9Q9P2N4 1935 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 EXOC1LA0A1B0GW35 172 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms