RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ANXA4P09525 319 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-209ENST00000438120 CDH4P55283 916 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ZNF155Q12901 538 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-209ENST00000438120 MINDY4Q4G0A6 757 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ARL13AQ5H913 290 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-209ENST00000438120 CAPSLQ8WWF8 208 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 C5orf34Q96MH7 638 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 FCRL4Q96PJ5 515 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 CCDC182A6NF36 153 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 SLC31A1O15431 190 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 PLOD3O60568 738 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 SLC26A3P40879 764 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ARF5P84085 180 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 DAW1Q8N136 415 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 SCLYQ96I15 445 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 DPEP2Q9H4A9 486 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 RCOR3Q9P2K3 495 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-209ENST00000438120 SSR3Q9UNL2 185 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 GPC6Q9Y625 555 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-209ENST00000438120 IGLV3-22A0A075B6J6 115 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 NR1H2P55055 460 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 CLCQ05315 142 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 PCDH1Q08174 1060 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ELP6Q0PNE2 266 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 RGS21Q2M5E4 152 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 SPRYD7Q5W111 196 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 KLHL35Q6PF15 583 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 SCAMP5Q8TAC9 235 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ARNTL2Q8WYA1 636 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 A0A1W2PQ67 120 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 GTF2H2Q13888 395 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ATAT1Q5SQI0 421 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ZDHHC20Q5W0Z9 365 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 GTF2H2CQ6P1K8 395 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 NPAS4Q8IUM7 802 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 KBTBD8Q8NFY9 601 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 PMEPA1Q969W9 287 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 AGAP2Q99490 1192 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 PCDHGC3Q9UN70 934 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 CCT3P49368 545 aaKnown RBP17.05■□□□□ 0.32
PTPRF-209ENST00000438120 ERVK-21P61565 698 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 PRSS58Q8IYP2 241 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 TPK1Q9H3S4 243 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 KLF15Q9UIH9 416 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 GRIN2DO15399 1336 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 PPLO60437 1756 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 OR1F1O43749 312 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 ARHGAP22Q7Z5H3 698 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 TRNT1Q96Q11 434 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 TEFMQ96QE5 360 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 TRMOQ9BU70 441 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 SDCBP2Q9H190 292 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 SAMD4AQ9UPU9 718 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 FAM25EA8MYX2 175 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 GDF10P55107 478 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 JAM2P57087 298 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 HSPB3Q12988 150 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 GALNT18Q6P9A2 607 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 ATG14Q6ZNE5 492 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 IRGQQ8WZA9 623 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 KLHL32Q96NJ5 620 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 HNRNPABQ99729 332 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 HOPXQ9BPY8 73 aaPredicted RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 CLK4Q9HAZ1 481 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 ARHGEF28Q8N1W1 1705 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 MATN3O15232 486 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 PRKCGP05129 697 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 MAGP20916 626 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 PPIBP23284 216 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 RYKP34925 604 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 IGFALSP35858 605 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 PRKCZQ05513 592 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 TDRD1Q9BXT4 1180 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 AK5Q9Y6K8 562 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 A0A1B0GVM2 712 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 TCAF2A6NFQ2 919 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 TAF4O00268 1085 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 OR4F21O95013 312 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 METTL18O95568 372 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 COL6A1P12109 1028 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 CDK9P50750 372 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 CA9Q16790 459 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 ZMIZ2Q8NF64 920 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 ALG2Q9H553 416 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 YJEFN3A6XGL0 299 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 PRNPP04156 253 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 UGT1A5P35504 534 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 LGALS3BPQ08380 585 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 RBBP4Q09028 425 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 FSTL4Q6MZW2 842 aa17.04■□□□□ 0.32
PTPRF-209ENST00000438120 RBM15BQ8NDT2 890 aaKnown RBP17.04■□□□□ 0.32
PTPRF-209ENST00000438120 SLC38A8A6NNN8 435 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 TRAFD1O14545 582 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-209ENST00000438120 TPST2O60704 377 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 NRLP54845 237 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 NAPRTQ6XQN6 538 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CPNE9Q8IYJ1 553 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 PIGKQ92643 395 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 CAPNS2Q96L46 248 aa17.03■□□□□ 0.32
PTPRF-209ENST00000438120 SLC25A51Q9H1U9 297 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms