RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 LTBRP36941 435 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 SOX9P48436 509 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 RPL14P50914 215 aaKnown RBP20.89■□□□□ 0.94
PTPRF-207ENST00000436724 ALDH18A1P54886 795 aaKnown RBP20.89■□□□□ 0.94
PTPRF-207ENST00000436724 IL2P60568 153 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 RALGDSQ12967 914 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 PFKFB4Q16877 469 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 LONP2Q86WA8 852 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 SIKE1Q9BRV8 207 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 TMEM245Q9H330 911 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 RNF112Q9ULX5 631 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 NPHS1O60500 1241 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 RPS3P23396 243 aaKnown RBP eCLIP20.89■□□□□ 0.938e-8■■□□□ 12.3
PTPRF-207ENST00000436724 IL12RB1P42701 662 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 B4GALNT1Q00973 533 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 SLC9B1Q4ZJI4 515 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 SLC22A9Q8IVM8 553 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 PTGR2Q8N8N7 351 aaPredicted RBP20.89■□□□□ 0.93
PTPRF-207ENST00000436724 ELSPBP1Q96BH3 223 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 SPATA16Q9BXB7 569 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 TNFRSF12AQ9NP84 129 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 PKD2L2Q9NZM6 624 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 DKK3Q9UBP4 350 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 MBD1Q9UIS9 605 aaPredicted RBP20.89■□□□□ 0.93
PTPRF-207ENST00000436724 GNPTGQ9UJJ9 305 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 C15orf41Q9Y2V0 281 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 DHRS7Q9Y394 339 aa20.89■□□□□ 0.93
PTPRF-207ENST00000436724 EDDM13A0A1B0GTR0 161 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 F8W8V4 182 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 SMIM24O75264 130 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 KAT7O95251 611 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 SLC25A14O95258 325 aaPredicted RBP20.88■□□□□ 0.93
PTPRF-207ENST00000436724 JUNP05412 331 aaKnown RBP20.88■□□□□ 0.93
PTPRF-207ENST00000436724 TPBGLP0DKB5 382 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 ZNF30P17039 623 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 PTPN5P54829 565 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 ATP6V0D1P61421 351 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 PRKAA1Q13131 559 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 FAM13CQ8NE31 585 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 STAG3L4Q8TBR4 150 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 FUBP1Q96AE4 644 aaKnown RBP20.88■□□□□ 0.93
PTPRF-207ENST00000436724 ARL8BQ9NVJ2 186 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 CACNA2D2Q9NY47 1150 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 NOP53Q9NZM5 478 aaKnown RBP20.88■□□□□ 0.93
PTPRF-207ENST00000436724 LNPEPQ9UIQ6 1025 aa20.88■□□□□ 0.93
PTPRF-207ENST00000436724 NCF1BA6NI72 391 aaPredicted RBP20.87■□□□□ 0.93
PTPRF-207ENST00000436724 NCF1CA8MVU1 366 aaPredicted RBP20.87■□□□□ 0.93
PTPRF-207ENST00000436724 SUPT3HB4E1H0 165 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 MATN2O00339 956 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 KERAO60938 352 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 SUPT3HO75486 399 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 ECI2O75521 394 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 SUPT7LO94864 414 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 NCF1P14598 390 aaPredicted RBP20.87■□□□□ 0.93
PTPRF-207ENST00000436724 IMPDH1P20839 514 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 RASSF2P50749 326 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 ZNF678Q5SXM1 525 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 LYPLAL1Q5VWZ2 237 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 PIP4K2CQ8TBX8 421 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 CNDP1Q96KN2 507 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 FAM129BQ96TA1 746 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 GSTO2Q9H4Y5 243 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 DNAJC28Q9NX36 388 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 PPM1HQ9ULR3 514 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 GRID2O43424 1007 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 MTX2O75431 263 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 PRNPP04156 253 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 GFAPP14136 432 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 PTPN4P29074 926 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 MMP12P39900 470 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 CDH13P55290 713 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 SH2D4BQ5SQS7 431 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 EGFLAMQ63HQ2 1017 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 UGT3A1Q6NUS8 523 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 EPGNQ6UW88 154 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 OR8D1Q8WZ84 308 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 ARRDC3Q96B67 414 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 COPS8Q99627 209 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 WRAP53Q9BUR4 548 aaKnown RBP20.87■□□□□ 0.93
PTPRF-207ENST00000436724 TRMT61BQ9BVS5 477 aaKnown RBP20.87■□□□□ 0.93
PTPRF-207ENST00000436724 NUF2Q9BZD4 464 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 FAM83DQ9H4H8 585 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 ZDHHC3Q9NYG2 299 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 APOBEC2Q9Y235 224 aaKnown RBP20.87■□□□□ 0.93
PTPRF-207ENST00000436724 FIS1Q9Y3D6 152 aa20.87■□□□□ 0.93
PTPRF-207ENST00000436724 GOLGA8QA0A0J9YX86 632 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 GOLGA8OA6NCC3 632 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 GOLGA8NF8WBI6 632 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 RPSAP08865 295 aaKnown RBP20.86■□□□□ 0.93
PTPRF-207ENST00000436724 HERVK_113P63132 956 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 NFKB2Q00653 900 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 UBAP2LQ14157 1087 aaKnown RBP20.86■□□□□ 0.93
PTPRF-207ENST00000436724 ELAVL3Q14576 367 aaKnown RBP20.86■□□□□ 0.93
PTPRF-207ENST00000436724 UNC50Q53HI1 259 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 FRMD7Q6ZUT3 714 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 DPPA4Q7L190 304 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 KDM1BQ8NB78 822 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 RIPOR3Q96MK2 946 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 ERVK-6Q9BXR3 956 aa20.86■□□□□ 0.93
PTPRF-207ENST00000436724 WDR55Q9H6Y2 383 aaPredicted RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms