RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TMEM44Q2T9K0 475 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 HIPK3Q9H422 1215 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 PIGBOS1A0A0B4J2F0 54 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 MUSKO15146 869 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 CD86P42081 329 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 IFI35P80217 286 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 EIPR1Q53HC9 387 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 VANGL1Q8TAA9 524 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 MCCC2Q9HCC0 563 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 MOXD2PA6NHM9 499 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 A8MVJ9 347 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 ANXA3P12429 323 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 RAB4BP61018 213 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 PIWIL4Q7Z3Z4 852 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 BLOC1S4Q9NUP1 217 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 ABI3Q9P2A4 366 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 RABL2AQ9UBK7 228 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 CFL2Q9Y281 166 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 NOX1Q9Y5S8 564 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 DISC1C4P0D8 188 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 TNFRSF11BO00300 401 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 CCR3P51677 355 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 GNMTQ14749 295 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 COL28A1Q2UY09 1125 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 ACMSDQ8TDX5 336 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF431Q8TF32 576 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 CPB2Q96IY4 423 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 TSNAXQ99598 290 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 C2orf49Q9BVC5 232 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 SPON1Q9HCB6 807 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 CNOT6Q9ULM6 557 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 CDH11P55287 796 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 MXRA8Q9BRK3 442 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 HHLA1C9JL84 531 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC22A1O15245 554 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 KCNJ2P63252 427 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 TBX2Q13207 712 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 PTGR2Q8N8N7 351 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 GDAP2Q9NXN4 497 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 KCTD5Q9NXV2 234 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 RAP2CQ9Y3L5 183 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC25A27O95847 323 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 RENP00797 406 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 CDH13P55290 713 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 DUSP4Q13115 394 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 VWA5B1Q5TIE3 1220 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SPATA19Q7Z5L4 167 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 CAND1Q86VP6 1230 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 LGI2Q8N0V4 545 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 GPRC5AQ8NFJ5 357 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SUSD6Q92537 303 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 GPATCH2LQ9NWQ4 482 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 NR2E1Q9Y466 385 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 A8MX80 341 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 IFNW1P05000 195 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF16P17020 682 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 PFKPQ01813 784 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 ELAVL2Q12926 359 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 UBAP2Q5T6F2 1119 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 CACUL1Q86Y37 369 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 EDEM1Q92611 657 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 DPAGT1Q9H3H5 408 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 ASB8Q9H765 288 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 KCNE2Q9Y6J6 123 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 H3BQF6 201 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 ITGAVP06756 1048 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 USP4Q13107 963 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 TAF1CQ15572 869 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 PPP1R15BQ5SWA1 713 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 NEPROQ6NW34 567 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SERPINA13PQ6UXR4 307 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 METTL3Q86U44 580 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SEPT12Q8IYM1 358 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 JSRP1Q96MG2 331 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 KCTD7Q96MP8 289 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 TGDSO95455 350 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 NELFEP18615 380 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 ZSCAN1Q8NBB4 408 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 METTL21AQ8WXB1 218 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 RNF121Q9H920 327 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 GSKIPQ9P0R6 139 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 KANSL3Q9P2N6 904 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC35G4P0C7Q5 338 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 SREBF2Q12772 1141 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 TBX1O43435 398 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 ITGA10O75578 1167 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 PTPN11Q06124 597 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 PUM1Q14671 1186 aaKnown RBP eCLIP13.23□□□□□ -0.292e-6■□□□□ 8.9
CCDC88A-204ENST00000413716 CBX2Q14781 532 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 PLEKHG6Q3KR16 790 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 TBRG1Q3YBR2 411 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 BORAQ6PGQ7 559 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 DPF1Q92782 380 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 RCN3Q96D15 328 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 HMGXB4Q9UGU5 601 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 DUSP10Q9Y6W6 482 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 HEG1Q9ULI3 1381 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 DCDC2CA8MYV0 355 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 ASLP04424 464 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 HERV-K104P61576 105 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms