RNA–Protein interactions for RNA: ENST00000409952.3

LSM5-205, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 4 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-205	ENST00000409952	SREBF2	Q12772	1141 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	GAMT	Q14353	236 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	GALNT3	Q14435	633 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	TXNRD1	Q16881	649 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	PNLIPRP3	Q17RR3	467 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	FAM98B	Q52LJ0	330 aa	Known RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	CEP55	Q53EZ4	464 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	KLHL26	Q53HC5	615 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	SGO1	Q5FBB7	561 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	RNASEH2B	Q5TBB1	312 aa	Known RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	HIST2H2BC	Q6DN03	193 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	HIST2H2BD	Q6DRA6	164 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	CES5A	Q6NT32	575 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	PCSK4	Q6UW60	755 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	TRIM72	Q6ZMU5	477 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	TMEM182	Q6ZP80	229 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	DCDC5	Q6ZRR9	648 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	RBM43	Q6ZSC3	357 aa	Known RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	DPPA4	Q7L190	304 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	MRGPRE	Q86SM8	312 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	TRIM74	Q86UV6	250 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	TRIM73	Q86UV7	250 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	SIAH3	Q8IW03	269 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	KDM8	Q8N371	416 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	FAM47B	Q8NA70	645 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	CPEB3	Q8NE35	698 aa	Known RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	KIAA1524	Q8TCG1	905 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	TAS1R2	Q8TE23	839 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	SLC25A43	Q8WUT9	341 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	HEXDC	Q8WVB3	486 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	NEU4	Q8WWR8	484 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	SHC3	Q92529	594 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	ATOH1	Q92858	354 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	ST6GALNAC6	Q969X2	333 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	MS4A10	Q96PG2	267 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	ACOX2	Q99424	681 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	ADAM2	Q99965	735 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	NTPCR	Q9BSD7	190 aa	Known RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	TMEM79	Q9BSE2	394 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	GATA5	Q9BWX5	397 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	OSBPL8	Q9BZF1	889 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	HIPK3	Q9H422	1215 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	MMRN2	Q9H8L6	949 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	SYTL2	Q9HCH5	934 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	WDR6	Q9NNW5	1121 aa	Known RBP	4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	EQTN	Q9NQ60	294 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	SLC35D1	Q9NTN3	355 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	SPG21	Q9NZD8	308 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	POLL	Q9UGP5	575 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	HPCAL4	Q9UM19	191 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	FZD1	Q9UP38	647 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	ERVK-11	Q9UQG0	969 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	ANGPTL3	Q9Y5C1	460 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	A3GALT2	U3KPV4	340 aa		4.88	□□□□□ -1.63
LSM5-205	ENST00000409952	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	CLRN2	A0PK11	232 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	CXorf65	A6NEN9	183 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	PPP6C	O00743	305 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	MAP2K7	O14733	419 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	RASGRF2	O14827	1237 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	ATP2C2	O75185	946 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	NDUFA10	O95299	355 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	MT-CO3	P00414	261 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	GH1	P01241	217 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	ETS1	P14921	441 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	MAK	P20794	623 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	RPA1	P27694	616 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	WNT5A	P41221	380 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	CLCN5	P51795	746 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	SPOCK1	Q08629	439 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	SYTL3	Q4VX76	610 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	PLEKHA7	Q6IQ23	1121 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	NEK5	Q6P3R8	708 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	CASC4	Q6P4E1	433 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	SLC27A1	Q6PCB7	646 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	FAM198B	Q6UWH4	519 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	VSTM1	Q6UX27	236 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	RGS9BP	Q6ZS82	235 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	LINGO2	Q7L985	606 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	ARMC9	Q7Z3E5	817 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	EXOC3L1	Q86VI1	746 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	TMC8	Q8IU68	726 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	FBXW8	Q8N3Y1	598 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	ZNF276	Q8N554	614 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	BEST2	Q8NFU1	509 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	BICD2	Q8TD16	824 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	LRRC8C	Q8TDW0	803 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	ATL1	Q8WXF7	558 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	LARP4B	Q92615	738 aa	Known RBP	4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	SNAPC3	Q92966	411 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	RNF183	Q96D59	192 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	MSI2	Q96DH6	328 aa	Known RBP	4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	SNRNP40	Q96DI7	357 aa	Known RBP	4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	P2RY11	Q96G91	374 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	BSCL2	Q96G97	398 aa	Predicted RBP	4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	PKP2	Q99959	881 aa		4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	WDR83	Q9BRX9	315 aa	Known RBP	4.87	□□□□□ -1.63
LSM5-205	ENST00000409952	PCGF1	Q9BSM1	259 aa		4.87	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms