RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KAZNQ674X7 775 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 KLHL10Q6JEL2 608 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 KIAA1324Q6UXG2 1013 aaKnown RBP6.54□□□□□ -1.36
USP40-202ENST00000409945 Q6ZWC4 215 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 UNC93AQ86WB7 457 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 ADSSL1Q8N142 457 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 FBXL13Q8NEE6 735 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 SPATA20Q8TB22 786 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 ITFG1Q8TB96 612 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 SLITRK1Q96PX8 696 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 TRMT61BQ9BVS5 477 aaKnown RBP6.54□□□□□ -1.36
USP40-202ENST00000409945 KIF9Q9HAQ2 790 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 CYP3A43Q9HB55 503 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 KIF17Q9P2E2 1029 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 STEAP1Q9UHE8 339 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 VPS4AQ9UN37 437 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 MUC3AQ02505 3323 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 PTPRJQ12913 1337 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 CCDC187A0A096LP49 1063 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 FAM90A20PA6NIJ5 464 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 ZNF263O14978 683 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 RTN3O95197 1032 aaPredicted RBP6.54□□□□□ -1.36
USP40-202ENST00000409945 HLA-DRAP01903 254 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 PSMC3P17980 439 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 FOLR3P41439 243 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 GCLMP48507 274 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 DIO1P49895 249 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 CCR5P51681 352 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 CLCN5P51795 746 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 SF3A3Q12874 501 aaKnown RBP eCLIP6.54□□□□□ -1.36
USP40-202ENST00000409945 TEAD2Q15562 447 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 RNASE12Q5GAN4 147 aaKnown RBP6.54□□□□□ -1.36
USP40-202ENST00000409945 MDH1BQ5I0G3 518 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 ABHD17BQ5VST6 288 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 PARM1Q6UWI2 310 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 SCARA5Q6ZMJ2 495 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 DENND5BQ6ZUT9 1274 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 TMTC1Q8IUR5 882 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 STKLD1Q8NE28 680 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 DNASE1L2Q92874 299 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 MYLPFQ96A32 169 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 C3orf49Q96BT1 292 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 MSANTD3Q96H12 275 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 PBKQ96KB5 322 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 KXD1Q9BQD3 176 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 BRD8Q9H0E9 1235 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 TASP1Q9H6P5 420 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 RMI1Q9H9A7 625 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 ARHGEF3Q9NR81 526 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 DLL3Q9NYJ7 618 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 IFT80Q9P2H3 777 aaPredicted RBP6.54□□□□□ -1.36
USP40-202ENST00000409945 MAN1B1Q9UKM7 699 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 TSC2P49815 1807 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 MYO10Q9HD67 2058 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 TRAV19A0A0A6YYK7 116 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 SLC38A8A6NNN8 435 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 H0YIZ8 118 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 ASS1P00966 412 aaKnown RBP6.53□□□□□ -1.36
USP40-202ENST00000409945 TRIM49P0CI25 452 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 TRIM49CP0CI26 452 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 BDNFP23560 247 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 CYP2F1P24903 491 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 MAGEA9P43362 315 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 NOP14P78316 857 aaKnown RBP6.53□□□□□ -1.36
USP40-202ENST00000409945 RAE1P78406 368 aaKnown RBP6.53□□□□□ -1.36
USP40-202ENST00000409945 KCNJ12Q14500 433 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 CLCA4Q14CN2 919 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 PTPRRQ15256 657 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 ZCWPW2Q504Y3 356 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 ISM2Q6H9L7 571 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 FAM171BQ6P995 826 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 LRRTM4Q86VH4 590 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 HEATR4Q86WZ0 1026 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 FAM114A1Q8IWE2 563 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 MLKLQ8NB16 471 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 NELFBQ8WX92 580 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 THAP4Q8WY91 577 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 FGF14Q92915 247 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 SMARCD1Q96GM5 515 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 SPATA17Q96L03 361 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 MRPL45Q9BRJ2 306 aaKnown RBP6.53□□□□□ -1.36
USP40-202ENST00000409945 NUDT22Q9BRQ3 303 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 DPCDQ9BVM2 203 aaPredicted RBP6.53□□□□□ -1.36
USP40-202ENST00000409945 TRPV4Q9HBA0 871 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 SAYSD1Q9NPB0 183 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 DUSP22Q9NRW4 184 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 RAB20Q9NX57 234 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 EHD3Q9NZN3 535 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 COL4A3Q01955 1670 aa6.53□□□□□ -1.36
USP40-202ENST00000409945 MYBPHLA2RUH7 354 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 MPPED1O15442 326 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 P4HA2O15460 535 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 IRAK2O43187 625 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TPM2P07951 284 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 EBLN1P0CF75 366 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 ATF6P18850 670 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 TBXAS1P24557 533 aaPredicted RBP6.52□□□□□ -1.37
USP40-202ENST00000409945 LMO2P25791 158 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 CAMK4Q16566 473 aa6.52□□□□□ -1.37
USP40-202ENST00000409945 FAM78AQ5JUQ0 283 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 225.9 ms