RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 AZGP1P25311 298 aaKnown RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 KCNK10P57789 538 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ARPC4P59998 168 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 TMTC4Q5T4D3 741 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ATAD3BQ5T9A4 648 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 TRAF7Q6Q0C0 670 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 TMEM173Q86WV6 379 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 NSMCE2Q96MF7 247 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 NSUN5Q96P11 429 aaKnown RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 RIBC2Q9H4K1 309 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 AKTIPQ9H8T0 292 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 NANOGQ9H9S0 305 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ENTPD7Q9NQZ7 604 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 GDAP2Q9NXN4 497 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 STAP1Q9ULZ2 295 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PCDHB3Q9Y5E6 796 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PIP5K1BO14986 540 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 RECQL5O94762 991 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ODC1P11926 461 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 CYP2C18P33260 490 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 AQP6Q13520 282 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 SMUG1Q53HV7 270 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 SGO1Q5FBB7 561 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PPP2R2DQ66LE6 453 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 RAP1GAP2Q684P5 730 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PRSS55Q6UWB4 352 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 SLC26A9Q7LBE3 791 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ZC3HC1Q86WB0 502 aaKnown RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 CIR1Q86X95 450 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 RORBQ92753 470 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 OSBPL2Q9H1P3 480 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ZNHIT2Q9UHR6 403 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 TCAF1Q9Y4C2 921 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 SLCO1B7G3V0H7 640 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 SULT1C4O75897 302 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 FYNP06241 537 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 CAPN3P20807 821 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 RACK1P63244 317 aaKnown RBP12.85□□□□□ -0.35
PTPRN-202ENST00000409251 LRP8Q14114 963 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 BTBD8Q5XKL5 378 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 ZDHHC13Q8IUH4 622 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 RAB2BQ8WUD1 216 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 SH3GL1Q99961 368 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 C17orf80Q9BSJ5 609 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 EML4Q9HC35 981 aaKnown RBP12.85□□□□□ -0.35
PTPRN-202ENST00000409251 MYF6P23409 242 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 TTKP33981 857 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 GSK3BP49841 420 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 MAXP61244 160 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 EFEMP1Q12805 493 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 TRIP4Q15650 581 aaPredicted RBP12.85□□□□□ -0.35
PTPRN-202ENST00000409251 TRIM60Q495X7 471 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.85□□□□□ -0.35
PTPRN-202ENST00000409251 OR8H2Q8N162 312 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 KCNN1Q92952 543 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 C19orf60Q96EN9 201 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 COQ7Q99807 217 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 RTP3Q9BQQ7 232 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 OR12D3Q9UGF7 316 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 DERAQ9Y315 318 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 TBKBP1A7MCY6 615 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 TSC22D2O75157 780 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 HTR1BP28222 390 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 CLK3P49761 638 aaKnown RBP12.85□□□□□ -0.35
PTPRN-202ENST00000409251 FOXA1P55317 472 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 SNX16P57768 344 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 IFITM3Q01628 133 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 CLLU1OSQ5K130 101 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 DEPDC1Q5TB30 811 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 NAPEPLDQ6IQ20 393 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 TMBIM1Q969X1 311 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 ACOX2Q99424 681 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 BDH2Q9BUT1 245 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 INTS7Q9NVH2 962 aaKnown RBP12.85□□□□□ -0.35
PTPRN-202ENST00000409251 RIC8BQ9NVN3 520 aa12.85□□□□□ -0.35
PTPRN-202ENST00000409251 TUBA8Q9NY65 449 aaPredicted RBP12.85□□□□□ -0.35
PTPRN-202ENST00000409251 ZCWPW2A0A1B0GU75 182 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 FAM47E-STBD1D6RA91 191 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 PTPN3P26045 913 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 PCSK1P29120 753 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 MTHFRP42898 656 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 SLC1A2P43004 574 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 CD151P48509 253 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 PYCR3Q53H96 274 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 CYBRD1Q53TN4 286 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 PIWIL4Q7Z3Z4 852 aaKnown RBP12.84□□□□□ -0.35
PTPRN-202ENST00000409251 TAC4Q86UU9 113 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 TOP6BLQ8N6T0 577 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 PTGR2Q8N8N7 351 aaPredicted RBP12.84□□□□□ -0.35
PTPRN-202ENST00000409251 AUTS2Q8WXX7 1259 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 HSFY1Q96LI6 401 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 GPR62Q9BZJ7 368 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 VPS4AQ9UN37 437 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 FAM50BQ9Y247 325 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 C16orf96A6NNT2 1141 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 PDZK1P1A8MUH7 402 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 SUPT3HB4E1H0 165 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 DIRAS1O95057 198 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 UGT2B4P06133 528 aa12.84□□□□□ -0.35
PTPRN-202ENST00000409251 APOA4P06727 396 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms