RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ACO2Q99798 780 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 LRRC3Q9BY71 257 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 PORCNQ9H237 461 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 VRTNQ9H8Y1 702 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ARMC1Q9NVT9 282 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 BAIAP2Q9UQB8 552 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 RNF6Q9Y252 685 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 TCRBV3S1A0A5B6 114 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ELOVL7A1L3X0 281 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 FABP12A6NFH5 140 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 A8MT66 165 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SLC1A7O00341 560 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 PTTG1O95997 202 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 NTRK1P04629 796 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 TALDO1P37837 337 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 PTPN9P43378 593 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 GJA9P57773 515 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF45Q02386 682 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 BST2Q10589 180 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 DDX39BQ13838 428 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 STARD3Q14849 445 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 CLCA4Q14CN2 919 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AGAP6Q5VW22 663 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF621Q6ZSS3 439 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 TIGD4Q8IY51 512 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 DCP1BQ8IZD4 617 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AADATQ8N5Z0 425 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 CLHC1Q8NHS4 586 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 FAM45AQ8TCE6 357 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AKAP1Q92667 903 aaKnown RBP eCLIP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 MTFMTQ96DP5 389 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ATG4CQ96DT6 458 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ITCHQ96J02 903 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 MYRFLQ96LU7 910 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 FBXL18Q96ME1 805 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 FCRL3Q96P31 734 aaPredicted RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AGAP4Q96P64 663 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SLC30A2Q9BRI3 323 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SLC22A4Q9H015 551 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 UBA2Q9UBT2 640 aaPredicted RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 HMGXB4Q9UGU5 601 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 CDH7Q9ULB5 785 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 PCDHGA8Q9Y5G5 932 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 PTGDR2Q9Y5Y4 395 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SNED1Q8TER0 1413 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 MYL12BO14950 172 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ERN1O75460 977 aaKnown RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 DNTTP04053 509 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ABCB1P08183 1280 aaPredicted RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 MSL3P1P0C860 447 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 PROZP22891 400 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 BDNFP23560 247 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 DIO3P55073 304 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 OLR1P78380 273 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 SMARCB1Q12824 385 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ZRANB3Q5FWF4 1079 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ZC3HC1Q86WB0 502 aaKnown RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 HS3ST5Q8IZT8 346 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 UXS1Q8NBZ7 420 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 WDR36Q8NI36 951 aaKnown RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 SLC2A14Q8TDB8 520 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ASB12Q8WXK4 309 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 RPL3LQ92901 407 aaKnown RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 FRMD6Q96NE9 622 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ITPAQ9BY32 194 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 UCK2Q9BZX2 261 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 CRISPLD1Q9H336 500 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 NECTIN3Q9NQS3 549 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 FAM118AQ9NWS6 357 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 H3BN98 237 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 DIRAS1O95057 198 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 MT-CYBP00156 380 aaPredicted RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 RPS3P23396 243 aaKnown RBP eCLIP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 GGT5P36269 586 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 SNAPC1Q16533 368 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 HMBOX1Q6NT76 420 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 PKN3Q6P5Z2 889 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ILDR2Q71H61 639 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 KRT74Q7RTS7 529 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 SLC44A2Q8IWA5 706 aaPredicted RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 SLC34A3Q8N130 599 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 WDTC1Q8N5D0 677 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 CELF2-AS1Q8N7Q2 184 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 OR6Q1Q8NGQ2 317 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 RHOXF1Q8NHV9 184 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 TINF2Q9BSI4 451 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 AGPAT4Q9NRZ5 378 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ARHGAP28Q9P2N2 729 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ATPIF1Q9UII2 106 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 POLR3HQ9Y535 204 aaPredicted RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 NFASCO94856 1347 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 IL6P05231 212 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 NOL9Q5SY16 702 aaKnown RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ATAD3CQ5T2N8 411 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF549Q6P9A3 640 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 SVOPLQ8N434 492 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 STAG3L4Q8TBR4 150 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 STYXQ8WUJ0 223 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 RNFT2Q96EX2 444 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms