RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 NR1D2Q14995 579 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 P3H1Q32P28 736 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 MAP9Q49MG5 647 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 DOK6Q6PKX4 331 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 ZNF761Q86XN6 746 aaPredicted RBP10.26□□□□□ -0.77
NEDD8-202ENST00000396828 CCDC13Q8IYE1 715 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.26□□□□□ -0.77
NEDD8-202ENST00000396828 BBOF1Q8ND07 529 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 PIH1D2Q8WWB5 315 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 SCAMP4Q969E2 229 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 LRRC45Q96CN5 670 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 CCDC74BQ96LY2 380 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 TSGA13Q96PP4 275 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 VAT1Q99536 393 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 CMKLR1Q99788 373 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 ERP44Q9BS26 406 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 TRIM4Q9C037 500 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 PCDH9Q9HC56 1237 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 FAM114A2Q9NRY5 505 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 HAUS2Q9NVX0 235 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 SEPT10Q9P0V9 454 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 ASIC3Q9UHC3 531 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 PHTF1Q9UMS5 762 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 SLC17A4Q9Y2C5 497 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 PCDHGA4Q9Y5G9 962 aa10.26□□□□□ -0.77
NEDD8-202ENST00000396828 ZFC3H1O60293 1989 aaKnown RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 TRBV23OR9-2A0A075B6M9 112 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 GOLGA6CA6NDK9 693 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 GOLGA6BA6NDN3 693 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 FZD6O60353 706 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 GOLGA6DP0CG33 693 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 MMP13P45452 471 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 DRG2P55039 364 aaKnown RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 GDF10P55107 478 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 PTSQ03393 145 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 CALCOCO2Q13137 446 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 CUL1Q13616 776 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 CLCA4Q14CN2 919 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 TRIP13Q15645 432 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 TBR1Q16650 682 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 MANEAQ5SRI9 462 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 LRRC66Q68CR7 880 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 RAET1GQ6H3X3 334 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 ARHGEF18Q6ZSZ5 1173 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 B4GALNT4Q76KP1 1039 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 MARK2Q7KZI7 788 aaKnown RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 PRICKLE2Q7Z3G6 844 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 PCGF5Q86SE9 256 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 PIM3Q86V86 326 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 FATE1Q969F0 183 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 RTP4Q96DX8 246 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 SCRN2Q96FV2 425 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 MCCC1Q96RQ3 725 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 TRIM51Q9BSJ1 452 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 GSDMCQ9BYG8 508 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 TRIM31Q9BZY9 425 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 ABCG8Q9H221 673 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 C10orf88Q9H8K7 445 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 ANKZF1Q9H8Y5 726 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 NT5MQ9NPB1 228 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 PHPT1Q9NRX4 125 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 TRNAU1APQ9NX07 287 aaKnown RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 GOLGA6AQ9NYA3 693 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 PAK5Q9P286 719 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 DMGDHQ9UI17 866 aaKnown RBP10.25□□□□□ -0.77
NEDD8-202ENST00000396828 TRHDEQ9UKU6 1024 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 PPIL1Q9Y3C6 166 aa10.25□□□□□ -0.77
NEDD8-202ENST00000396828 SPTA1P02549 2419 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 IGHV1OR21-1A0A087WYE8 117 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 C5orf60A6NFR6 353 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 RHPN2P1A8MT19 583 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 MATN3O15232 486 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 VPS41P49754 854 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 LIMK2P53671 638 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 CAV1Q03135 178 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 DPTQ07507 201 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 ILF3Q12906 894 aaKnown RBP eCLIP10.24□□□□□ -0.773e-7■■□□□ 13.3
NEDD8-202ENST00000396828 GPS1Q13098 491 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 MARC1Q5VT66 337 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 DUPD1Q68J44 220 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 ITPRIPL1Q6GPH6 555 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 WDR93Q6P2C0 686 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 BBS5Q8N3I7 341 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 TEX26Q8N6G2 289 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 IFT81Q8WYA0 676 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 NKD1Q969G9 470 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 TMEM159Q96B96 161 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 SCARF2Q96GP6 870 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-202ENST00000396828 SNF8Q96H20 258 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 SEMA3CQ99985 751 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 PARD6BQ9BYG5 372 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 FAM129AQ9BZQ8 928 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 DPH5Q9H2P9 285 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 STARD5Q9NSY2 213 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 OCIAD1Q9NX40 245 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 WHRNQ9P202 907 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 KLHL8Q9P2G9 620 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-202ENST00000396828 NEU2Q9Y3R4 380 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 PRKAB1Q9Y478 270 aa10.24□□□□□ -0.77
NEDD8-202ENST00000396828 OAS3Q9Y6K5 1087 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms