RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TRIM74Q86UV6 250 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 TRIM73Q86UV7 250 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ZBTB46Q86UZ6 589 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 RBM12BQ8IXT5 1001 aaKnown RBP12.59□□□□□ -0.39
SHMT1-205ENST00000395684 KLHDC9Q8NEP7 349 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 SMIM14Q96QK8 99 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 SYT17Q9BSW7 474 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 BDH2Q9BUT1 245 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 C1QTNF3Q9BXJ4 246 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ZFYVE28Q9HCC9 887 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 SPO11Q9Y5K1 396 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ANKRD12Q6UB98 2062 aa12.58□□□□□ -0.39
SHMT1-205ENST00000395684 TYW5A2RUC4 315 aaKnown RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 BTN3A1O00481 513 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 GPR182O15218 404 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 HMBSP08397 361 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 ENO2P09104 434 aaPredicted RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 UGT1A1P22309 533 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 UGT1A4P22310 534 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 OR1E1P30953 314 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 SHMT2P34897 504 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 UGT1A3P35503 534 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 UGT1A5P35504 534 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 ERVK-8P63133 956 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 RAD51Q06609 339 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 AAK1Q2M2I8 961 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 PDCD4Q53EL6 469 aaKnown RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 HABP4Q5JVS0 413 aaKnown RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 Q6ZSR9 355 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 PROSER1Q86XN7 944 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 PDPRQ8NCN5 879 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 OR13F1Q8NGS4 319 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 OSCP1Q8WVF1 389 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 ACDQ96AP0 544 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 RPRD1AQ96P16 312 aaPredicted RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 CDK15Q96Q40 435 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 MTG1Q9BT17 334 aaPredicted RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 NUSAP1Q9BXS6 441 aaKnown RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 LRRC3Q9BY71 257 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 YTHDF1Q9BYJ9 559 aaKnown RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 FAM234BA2RU67 622 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 DRGXA6NNA5 263 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 H0YAE9 185 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 KLK8O60259 260 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 B4GALT3O60512 393 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 CPNE6O95741 557 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 TSPAN12O95859 305 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 ARSFP54793 590 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 MGAT3Q09327 533 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 GRSF1Q12849 480 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 ILF2Q12905 390 aaKnown RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 NFATC3Q12968 1075 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 IRF5Q13568 498 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF235Q14590 738 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 RBBP7Q16576 425 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 PLA2G4EQ3MJ16 856 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 CXCL17Q6UXB2 119 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 DLEU7Q6UYE1 221 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 HID1Q8IV36 788 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 ZC3H7AQ8IWR0 971 aaKnown RBP12.58□□□□□ -0.4
SHMT1-205ENST00000395684 DTWD1Q8N5C7 304 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 CDYL2Q8N8U2 506 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 FNDC5Q8NAU1 212 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 OR4K2Q8NGD2 314 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 BORCS5Q969J3 196 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 BTN2A3PQ96KV6 586 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 PPM1MQ96MI6 270 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 TRIB3Q96RU7 358 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 TBC1D23Q9NUY8 699 aa12.58□□□□□ -0.4
SHMT1-205ENST00000395684 A0A0U1RQF3 1178 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 SYCE1LA8MT33 242 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 STX16O14662 325 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 SYNCRIPO60506 623 aaKnown RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PRAMEF11O60813 436 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 OR4F21O95013 312 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ALBP02768 609 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PCNAP12004 261 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 TYMPP19971 482 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 EEF1B2P24534 225 aaKnown RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 BMXP51813 675 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF140P52738 457 aaPredicted RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 MTPNP58546 118 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 BTG3Q14201 252 aaPredicted RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PTPRNQ16849 979 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PARP15Q460N3 678 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ACBD5Q5T8D3 534 aaPredicted RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF773Q6PK81 442 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ZFAND4Q86XD8 727 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ATP6V0D2Q8N8Y2 350 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 KLHL23Q8NBE8 558 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 OR52B6Q8NGF0 335 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 SGCDQ92629 289 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 PLEKHA8Q96JA3 519 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 NSMCE2Q96MF7 247 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 TUBA1CQ9BQE3 449 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 FANCEQ9HB96 536 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 NLE1Q9NVX2 485 aaPredicted RBP12.57□□□□□ -0.4
SHMT1-205ENST00000395684 ZIM2Q9NZV7 527 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 SUN2Q9UH99 717 aa12.57□□□□□ -0.4
SHMT1-205ENST00000395684 EVLQ9UI08 416 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms