RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OR4C6Q8NH72 309 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 BLOC1S5Q8TDH9 187 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 GLMNQ92990 594 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 HDAC10Q969S8 669 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CPNE1Q99829 537 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CCM2Q9BSQ5 444 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 AARSD1Q9BTE6 412 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 LRRC61Q9BV99 259 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MARCH4Q9P2E8 410 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 PDP2Q9P2J9 529 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 SNX11Q9Y5W9 270 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 R4GN57 208 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CACNA1IQ9P0X4 2223 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 HMX2A2RU54 273 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 TMEM202A6NGA9 273 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 F8W8V4 182 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SLC16A5O15375 505 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 RIPK2O43353 540 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ABCB7O75027 752 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 FSBPO95073 299 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 H2AFXP16104 143 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 KIF19Q2TAC6 998 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ADGRD1Q6QNK2 874 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ASCL5Q7RTU5 278 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SERPINA9Q86WD7 417 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 PHACTR4Q8IZ21 702 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 MYRIPQ8NFW9 859 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 OR6C4Q8NGE1 309 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 HM13Q8TCT9 377 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SLC44A1Q8WWI5 657 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SCAMP4Q969E2 229 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 FGF22Q9HCT0 170 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SLC24A2Q9UI40 661 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 PCDHGA1Q9Y5H4 931 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 TCRBV9S1A1TA0A576 114 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 LIN7AO14910 233 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 KPNA5O15131 536 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 NOBOXO60393 691 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 PCDH8O95206 1070 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 TNFP01375 233 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 PPARGP37231 505 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 CCNFP41002 786 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 CDKL1Q00532 357 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 BRD3Q15059 726 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 C6orf132Q5T0Z8 1188 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 GRTP1Q5TC63 336 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 CDCP2Q5VXM1 449 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 MRNIPQ6NTE8 343 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 CYHR1Q6ZMK1 362 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ZC3HC1Q86WB0 502 aaKnown RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SLC25A45Q8N413 288 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 NETO1Q8TDF5 533 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ATOH1Q92858 354 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 CDC42EP4Q9H3Q1 356 aaKnown RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SEMA4GQ9NTN9 838 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 MTRF1LQ9UGC7 380 aaKnown RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 GMEB2Q9UKD1 530 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ACSL5Q9ULC5 683 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 LNP1A1A4G5 178 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 MGAT4DA6NG13 374 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SLC30A4O14863 429 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 TSPAN12O95859 305 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 MSL3P1P0C860 447 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 TPH1P17752 444 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ENGP17813 658 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SDHBP21912 280 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SLC1A2P43004 574 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 GPR1P46091 355 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 HNRNPKP61978 463 aaKnown RBP eCLIP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 KCTD16Q68DU8 428 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 NEPROQ6NW34 567 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 CLEC14AQ86T13 490 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 KCNMB4Q86W47 210 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 PGBD3Q8N328 593 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 RIBC1Q8N443 379 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF548Q8NEK5 533 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 GABPB2Q8TAK5 448 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 DCAKDQ8WVC6 231 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 OR2M4Q96R27 311 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 RBBP8Q99708 897 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 APOL2Q9BQE5 337 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 DUSP23Q9BVJ7 150 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 ZC3H7BQ9UGR2 993 aaKnown RBP6.91□□□□□ -1.3
LIMA1-202ENST00000394943 SUFUQ9UMX1 484 aa6.91□□□□□ -1.3
LIMA1-202ENST00000394943 F5P12259 2224 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 LILRA5A6NI73 299 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 OR5K4A6NMS3 321 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 H3BM21 787 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 GFYI3L273 518 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 KHNYNO15037 678 aaKnown RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 FLRT2O43155 660 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 FKBP9O95302 570 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 CKMT1AP12532 417 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF7P17097 686 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 TNNT3P45378 269 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 CCT8P50990 548 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 LIMK2P53671 638 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 SLC7A5Q01650 507 aa6.9□□□□□ -1.3
LIMA1-202ENST00000394943 PDIA2Q13087 525 aaKnown RBP6.9□□□□□ -1.3
LIMA1-202ENST00000394943 PTPRCAPQ14761 206 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms