RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FRMD3A2A2Y4 597 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 LILRA5A6NI73 299 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 AGAP14A8MT82 685 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 NKX2-2O95096 273 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 OR2C1O95371 312 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 CLTBP09497 229 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 PATE4P0C8F1 98 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 CDAP32320 146 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ACSL1P33121 698 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 USP8P40818 1118 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 RAD52P43351 418 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 GABRB2P47870 512 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 F2RL1P55085 397 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ERVK11-1P61568 191 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 GTF2H2Q13888 395 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 DRAP1Q14919 205 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 FCN2Q15485 313 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 DUSP28Q4G0W2 176 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 PDSS1Q5T2R2 415 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 CFAP58Q5T655 872 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ARHGAP17Q68EM7 881 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 OR7E24Q6IFN5 339 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 GTF2H2CQ6P1K8 395 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 BRINP3Q76B58 766 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 RPAP2Q8IXW5 612 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 BEST3Q8N1M1 668 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF485Q8NCK3 441 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 KLHDC9Q8NEP7 349 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 OR10V1Q8NGI7 309 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 OR52I2Q8NH67 350 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 POMGNT1Q8WZA1 660 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 NSUN4Q96CB9 384 aaKnown RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 SMARCAD1Q9H4L7 1026 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 SH2D4AQ9H788 454 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ASAH2Q9NR71 780 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 DLGAP2Q9P1A6 1054 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ACSL5Q9ULC5 683 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 AAR2Q9Y312 384 aaKnown RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 CEPT1Q9Y6K0 416 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 TAF4O00268 1085 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 TIMM44O43615 452 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 WDR1O75083 606 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 IPO7O95373 1038 aaKnown RBP2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CSH1P0DML2 217 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CSH2P0DML3 217 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 GCH1P30793 250 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CDH8P55286 799 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 SNX16P57768 344 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 COG7P83436 770 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 NIPAL4Q0D2K0 466 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CHAF1BQ13112 559 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 OLIG2Q13516 323 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ACVR2BQ13705 512 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 IRF3Q14653 427 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CRYMQ14894 314 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CXorf66Q5JRM2 361 aaPredicted RBP2.1□□□□□ -2.07
VPS13A-206ENST00000376646 GGNBP1Q5YKI7 109 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 METTL2BQ6P1Q9 378 aaKnown RBP2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CEACAM20Q6UY09 585 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CHST9Q7L1S5 443 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 GALNT5Q7Z7M9 940 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 METTL27Q8N6F8 245 aaPredicted RBP2.1□□□□□ -2.07
VPS13A-206ENST00000376646 WDSUB1Q8N9V3 476 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 PIGTQ969N2 578 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 LINGO1Q96FE5 620 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CALML4Q96GE6 196 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 METTL2AQ96IZ6 378 aaKnown RBP2.1□□□□□ -2.07
VPS13A-206ENST00000376646 C1orf74Q96LT6 269 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 F2RL3Q96RI0 385 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 MXD3Q9BW11 206 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ANKEF1Q9NU02 776 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ABI3Q9P2A4 366 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 POLG2Q9UHN1 485 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ERVK-11Q9UQG0 969 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 SMCHD1A6NHR9 2005 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 UTYO14607 1347 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 A0A1W2PQ09 198 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 A0A1W2PRG0 241 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 TMCC2O75069 709 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 TSPAN9O75954 239 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 STARD3NLO95772 234 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 AKR1B1P15121 316 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CDH2P19022 906 aaPredicted RBP2.1□□□□□ -2.07
VPS13A-206ENST00000376646 PSMB10P40306 273 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 AMPHP49418 695 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 GALCP54803 685 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 PRAMEP78395 509 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 RUNX1T1Q06455 604 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ZSCAN23Q3MJ62 389 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF876PQ49A33 203 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 MFSD4BQ5TF39 518 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 TMEM154Q6P9G4 183 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF497Q6ZNH5 498 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 PQLC2Q6ZP29 291 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 CLEC17AQ6ZS10 378 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ADGRF2Q8IZF7 708 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 TAGAPQ8N103 731 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 OR8H2Q8N162 312 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 SLC44A1Q8WWI5 657 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 ERP27Q96DN0 273 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms