RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 FGFBP2Q9BYJ0 223 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PLEKHA1Q9HB21 404 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 TMEM165Q9HC07 324 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 EXD2Q9NVH0 621 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 MAFFQ9ULX9 164 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 R3HDM2Q9Y2K5 976 aaKnown RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 LRRC72A6NJI9 287 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 E7ENX8 843 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 E9PAM4 449 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 NOBOXO60393 691 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 FABP3P05413 133 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 S100A6P06703 90 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 MAPK8P45983 427 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PSEN1P49768 467 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CRYBB1P53674 252 aaPredicted RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 ENPEPQ07075 957 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CRY2Q49AN0 593 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 SLC8B1Q6J4K2 584 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CHST15Q7LFX5 561 aaPredicted RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 LIX1Q8N485 282 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PRDM8Q9NQV8 689 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 TCRBV7S2A1N4TA0A589 114 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 ATG13O75143 517 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 RPP40O75818 363 aaKnown RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PRKCGP05129 697 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 FGF1P05230 155 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CTSOP43234 321 aaPredicted RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PTPN9P43378 593 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 RPL5P46777 297 aaKnown RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 OR51V1Q9H2C8 321 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 GLOD4Q9HC38 313 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CEMIPQ8WUJ3 1361 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 ERCC6L2Q5T890 1561 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 WRBO00258 174 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 FCER2P06734 321 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 GCNT6Q5T4J0 391 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 RNF220Q5VTB9 566 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 IL23RQ5VWK5 629 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 TOP1MTQ969P6 601 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 DMRTB1Q96MA1 342 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CPXM1Q96SM3 734 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 LPIN3Q9BQK8 851 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 FADS3Q9Y5Q0 445 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PLIN3O60664 434 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 SERPINA3P01011 423 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ATP6V0D1P61421 351 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 DNAJC19Q96DA6 116 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ZNF570Q96NI8 536 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 TTPALQ9BTX7 342 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 IPPKQ9H8X2 491 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 TTC24A2A3L6 582 aaPredicted RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 SHOX2O60902 331 aaPredicted RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 TSPAN9O75954 239 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 BPGMP07738 259 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 PAOXQ6QHF9 649 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 LRRC55Q6ZSA7 311 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 CPSF7Q8N684 471 aaKnown RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 HIPK3Q9H422 1215 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 MED31Q9Y3C7 131 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 FAM240BA0A1B0GVZ2 78 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 APODP05090 189 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ALOX5P09917 674 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 RPL17P18621 184 aaKnown RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 CCR10P46092 362 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ALDH3A2P51648 485 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ZNF135P52742 658 aaPredicted RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 MAP2K5Q13163 448 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ARMC10Q8N2F6 343 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 TMEM27Q9HBJ8 222 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 MARK1Q9P0L2 795 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 MAPRE3Q9UPY8 281 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 GRIP1Q9Y3R0 1128 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 TOR1BO14657 336 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 SLC31A1O15431 190 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 OR7A10O76100 309 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ANXA4P09525 319 aaPredicted RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ACADLP28330 430 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 CDH12P55289 794 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 SLC25A52Q3SY17 297 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 MSANTD2Q6P1R3 559 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 METTL21AQ8WXB1 218 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 S100ZQ8WXG8 99 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 NMUR2Q9GZQ4 415 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 ACSS3Q9H6R3 686 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 HBS1LQ9Y450 684 aaKnown RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 NR2E3Q9Y5X4 410 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 KLRC4O43908 158 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 LAMP2P13473 410 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 RGS8P57771 180 aaPredicted RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 GBE1Q04446 702 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 DDR1Q08345 913 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 TMPRSS9Q7Z410 1059 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 TBATAQ96M53 351 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 YIPF4Q9BSR8 244 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 RTKNQ9BST9 563 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 C12orf4Q9NQ89 552 aa13.6□□□□□ -0.23
COL4A1-201ENST00000375820 SAMD4AQ9UPU9 718 aaKnown RBP13.6□□□□□ -0.23
COL4A1-201ENST00000375820 C2P06681 752 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 CLCNKBP51801 687 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 SLC5A3P53794 718 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms