RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 IPPKQ9H8X2 491 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 COPG2Q9UBF2 871 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 CNMDO75829 334 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 ZMPSTE24O75844 475 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 TYRP14679 529 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 TCF4P15884 667 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 BLKP51451 505 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 TAS2R39P59534 338 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 OGDHQ02218 1023 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 OASLQ15646 514 aaKnown RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 PPM1JQ5JR12 505 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 ZC3H3Q8IXZ2 948 aaKnown RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 SPOCK2Q92563 424 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 NELL1Q92832 810 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 SUCOQ9UBS9 1254 aaKnown RBP11.49□□□□□ -0.57
SYNE1-204ENST00000367248 GGA2Q9UJY4 613 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 FBXW2Q9UKT8 454 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 DRD4P21917 467 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 XKR4Q5GH76 650 aa11.49□□□□□ -0.57
SYNE1-204ENST00000367248 PLIN3O60664 434 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 NSG1P42857 185 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 GCNT7Q6ZNI0 430 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 SRFBP1Q8NEF9 429 aaKnown RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 XYLT2Q9H1B5 865 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 REEP1Q9H902 201 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 GRHL1Q9NZI5 618 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 STON1Q9Y6Q2 735 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 SNAP91O60641 907 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 SERPINA6P08185 405 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 RPL10P27635 214 aaKnown RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 IFNGR2P38484 337 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 PXNP49023 591 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 C9orf64Q5T6V5 341 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 FSTL4Q6MZW2 842 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 SMG8Q8ND04 991 aaKnown RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 RAD51AP1Q96B01 352 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 PPCDCQ96CD2 204 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 IL36AQ9UHA7 158 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 OR1F1O43749 312 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 MPSTP25325 297 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 MAPK10P53779 464 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 LSM12Q3MHD2 195 aaKnown RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 GPR33Q49SQ1 333 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 LY6G5CQ5SRR4 150 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF549Q6P9A3 640 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 ZDHHC13Q8IUH4 622 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 DEPDC7Q96QD5 511 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 WDR55Q9H6Y2 383 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 POLR1BQ9H9Y6 1135 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 CD248Q9HCU0 757 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 MIOSQ9NXC5 875 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 KIF13AQ9H1H9 1805 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 A0A0G2JN53 185 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 GRXCR1A8MXD5 290 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 MRPS22P82650 360 aaKnown RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 LCP2Q13094 533 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 SETD9Q8NE22 299 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 MRPL48Q96GC5 212 aaKnown RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 TELO2Q9Y4R8 837 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 POLR3HQ9Y535 204 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 AP4S1Q9Y587 144 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 RHOP08100 348 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 ARCN1P48444 511 aaKnown RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 ANXA8L1Q5VT79 327 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 BNIPLQ7Z465 357 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 AADATQ8N5Z0 425 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 SPATA5L1Q9BVQ7 753 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 GPR62Q9BZJ7 368 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 SPAG4Q9NPE6 437 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 HLA-DQB2P05538 268 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 JMJD7P0C870 316 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 EPS8Q12929 822 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF276Q8N554 614 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 ADCY4Q8NFM4 1077 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 RCN3Q96D15 328 aa11.48□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF514Q96K75 400 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 POLR3BQ9NW08 1133 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-204ENST00000367248 TRIM38O00635 465 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CCNA2P20248 432 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 PPIBP23284 216 aaKnown RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 MTHFRP42898 656 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ARRB1P49407 418 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 NDUFA9Q16795 377 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ALG11Q2TAA5 492 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TPRG1Q6ZUI0 275 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 DENND6AQ8IWF6 608 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CPNE9Q8IYJ1 553 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 NCSTNQ92542 709 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 C9orf16Q9BUW7 83 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 WDR26Q9H7D7 661 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CCDC177Q9NQR7 707 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CORO2BQ9UQ03 480 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 FAM208AQ9UK61 1670 aaKnown RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 MMP20O60882 483 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 SLC22A3O75751 556 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ATP6V1G2O95670 118 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 BUD31P41223 144 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 MTAPQ13126 283 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms