RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TMEM207Q6UWW9 146 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 ADAMTSL4Q6UY14 1074 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 CLEC14AQ86T13 490 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 TRIM74Q86UV6 250 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 PHYKPLQ8IUZ5 450 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.67■□□□□ 0.74
CLN3-205ENST00000359984 PLD6Q8N2A8 252 aaKnown RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 ANKRD42Q8N9B4 389 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 TCP10LQ8TDR4 215 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 ASB12Q8WXK4 309 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 KCNJ9Q92806 393 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 LENG8Q96PV6 779 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 UHRF1Q96T88 793 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 ACOT9Q9Y305 439 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 PYGLP06737 847 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 CHRM3P20309 590 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 MSH3P20585 1137 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 CD9P21926 228 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 OXTRP30559 389 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 CCT5P48643 541 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 SLC18A1P54219 525 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 DET1Q7L5Y6 550 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 CAMKK1Q8N5S9 505 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 FRMD1Q8N878 549 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 DENND1AQ8TEH3 1009 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 RLN3Q8WXF3 142 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 GPR21Q99679 349 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 IER2Q9BTL4 223 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 C1QTNF7Q9BXJ2 289 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 CNOT10Q9H9A5 744 aaKnown RBP19.66■□□□□ 0.74
CLN3-205ENST00000359984 GPAMQ9HCL2 828 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 WSB2Q9NYS7 404 aaPredicted RBP19.66■□□□□ 0.74
CLN3-205ENST00000359984 DCDC2Q9UHG0 476 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 ANKRD6Q9Y2G4 727 aa19.66■□□□□ 0.74
CLN3-205ENST00000359984 OAS3Q9Y6K5 1087 aaKnown RBP19.66■□□□□ 0.74
CLN3-205ENST00000359984 CFAP99D6REC4 459 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 H3BMM5 538 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 ZNF217O75362 1048 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 VPS26AO75436 327 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 RALBP11234 206 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 INPP5AQ14642 412 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 CENPLQ8N0S6 344 aaPredicted RBP19.65■□□□□ 0.74
CLN3-205ENST00000359984 LKAAEAR1Q8TD35 194 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 HEXDCQ8WVB3 486 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 HIC2Q96JB3 615 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 SLC30A3Q99726 388 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 C1QTNF1Q9BXJ1 281 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 C6orf106Q9H6K1 298 aaPredicted RBP19.65■□□□□ 0.74
CLN3-205ENST00000359984 POPDC3Q9HBV1 291 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 FZD3Q9NPG1 666 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 ZNF358Q9NW07 568 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 SLC17A7Q9P2U7 560 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 DOCK9Q9BZ29 2069 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 A0A087X1B8 175 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 IGHV1OR15-9A0A0B4J2B8 117 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 E5RI56 91 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 K7ESF4 209 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 SGTAO43765 313 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 CHN1P15882 459 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 ITGB6P18564 788 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 CD6P30203 668 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 TMEM115Q12893 351 aaPredicted RBP19.65■□□□□ 0.74
CLN3-205ENST00000359984 PDAP1Q13442 181 aaKnown RBP19.65■□□□□ 0.74
CLN3-205ENST00000359984 HEATR4Q86WZ0 1026 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 FAM160A2Q8N612 972 aaPredicted RBP19.65■□□□□ 0.74
CLN3-205ENST00000359984 RASGEF1AQ8N9B8 481 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 MGARPQ8TDB4 240 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 KCTD4Q8WVF5 259 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 ANKRD49Q8WVL7 239 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 SGF29Q96ES7 293 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 COX14Q96I36 57 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 NKIRAS1Q9NYS0 192 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 PLLPQ9Y342 182 aa19.65■□□□□ 0.74
CLN3-205ENST00000359984 SHOX2O60902 331 aaPredicted RBP19.64■□□□□ 0.73
CLN3-205ENST00000359984 GLRA3O75311 464 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 ZWINTO95229 277 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 TRIM16O95361 564 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 GSTA1P08263 222 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 TEAD1P28347 426 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 IGFALSP35858 605 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 TRIM23P36406 574 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 MAGEA9P43362 315 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 CLCN7P51798 805 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 DLG1Q12959 904 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 INSCQ1MX18 579 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 PAQR3Q6TCH7 311 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 MAMSTRQ6ZN01 415 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 CCDC91Q7Z6B0 441 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 ADGRG6Q86SQ4 1221 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 SPATA6LQ8N4H0 392 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 SIDT2Q8NBJ9 832 aaKnown RBP19.64■□□□□ 0.73
CLN3-205ENST00000359984 GIMAP7Q8NHV1 300 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 CD200R1Q8TD46 325 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 UBXN10Q96LJ8 280 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 TEX101Q9BY14 249 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 IQCGQ9H095 443 aaKnown RBP19.64■□□□□ 0.73
CLN3-205ENST00000359984 MLXIPLQ9NP71 852 aa19.64■□□□□ 0.73
CLN3-205ENST00000359984 SARS2Q9NP81 518 aaKnown RBP19.64■□□□□ 0.73
CLN3-205ENST00000359984 TM9SF1O15321 606 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms