RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 HERC3Q15034 1050 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 BAIAP2Q9UQB8 552 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 TCAF1Q9Y4C2 921 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 PTCH2Q9Y6C5 1203 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 AP3D1O14617 1153 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 HOXA2O43364 376 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 RPP40O75818 363 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 RPLP2P05387 115 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 PIK3R6Q5UE93 754 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 BHLHB9Q6PI77 547 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 CCDC185Q8N715 623 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 OR4A15Q8NGL6 344 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 PPCDCQ96CD2 204 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 DNAJB9Q9UBS3 223 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 AGO1Q9UL18 857 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 POLR1DQ9Y2S0 133 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 MYPNQ86TC9 1320 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 UROSP10746 265 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 BRMS1LQ5PSV4 323 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 FAM151BQ6UXP7 276 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 COPS8Q99627 209 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 TLL2Q9Y6L7 1015 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC30A4O14863 429 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 MT-CYBP00156 380 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 RPN2P04844 631 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 KLRC2P26717 231 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 TGFBR2P37173 567 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 MPP2Q14168 576 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 PGBD2Q6P3X8 592 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 DCLRE1AQ6PJP8 1040 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 C1orf127Q8N9H9 656 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 ZFP28Q8NHY6 868 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC39A3Q9BRY0 314 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 NID2Q14112 1375 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 KPNA5O15131 536 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 ERAL1O75616 437 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 PGRP06401 933 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 ABRQ12979 859 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 DSG4Q86SJ6 1040 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 ANKRD46Q86W74 232 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 PACRGLQ8N7B6 248 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 CNPPD1Q9BV87 410 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 BCAS3Q9H6U6 928 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 ADARB2Q9NS39 739 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 OR4F21O95013 312 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 CHRM5P08912 532 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 PTPN9P43378 593 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 DOK6Q6PKX4 331 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 UNC5BQ8IZJ1 945 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 MPP5Q8N3R9 675 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 PPP1R13LQ8WUF5 828 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 DTLQ9NZJ0 730 aa19.37■□□□□ 0.69
CCDC88B-202ENST00000356786 CXCR6O00574 342 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 IRF9Q00978 393 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 BIKQ13323 160 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 VANGL1Q8TAA9 524 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 GTF2E2P29084 291 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 GRM5P41594 1212 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 GRIA1P42261 906 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 SNAPC1Q16533 368 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 LAPTM4BQ86VI4 370 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 MAGEB10Q96LZ2 347 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 ZDHHC6Q9H6R6 413 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 INTS10Q9NVR2 710 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 FADS2P1A8MWK0 482 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC28A2O43868 658 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 ORC5O43913 435 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 FMO3P31513 532 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 FKBP1CQ5VVH2 108 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 RNF44Q7L0R7 432 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 NKX2-3Q8TAU0 364 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 TCF25Q9BQ70 676 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 YTHDF1Q9BYJ9 559 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 OXSMQ9NWU1 459 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 GSAPA4D1B5 854 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 PGK1P00558 417 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 HLA-DQA2P01906 255 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 ADORA2AP29274 412 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 OMPP47874 163 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 KCNA10Q16322 511 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 MOGQ16653 247 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 TXNRD3NBQ6F5E7 133 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 GPR153Q6NV75 609 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 ESAMQ96AP7 390 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC9A7Q96T83 725 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 NR2E3Q9Y5X4 410 aa19.36■□□□□ 0.69
CCDC88B-202ENST00000356786 FABP12A6NFH5 140 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 CCRL2O00421 344 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 FPGTO14772 594 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 STK16O75716 305 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 RSL1D1O76021 490 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 TUFMP49411 452 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 RHDQ02161 417 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 PLPPR4Q7Z2D5 763 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 NSMCE3Q96MG7 304 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 FAIM2Q9BWQ8 316 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 PRELID1Q9Y255 219 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 TESMINQ9Y4I5 508 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 NUDT14O95848 222 aa19.35■□□□□ 0.69
CCDC88B-202ENST00000356786 ECDO95905 644 aaPredicted RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms