RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 HOXD9P28356 352 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 EEF1DP29692 281 aaKnown RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ALDH4A1P30038 563 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ACVRL1P37023 503 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 RPS3AP61247 264 aaKnown RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 COL19A1Q14993 1142 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 KCTD11Q693B1 232 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ANKRD26P1Q6NSI1 321 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CYP2R1Q6VVX0 501 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF534Q76KX8 674 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 LYSMD3Q7Z3D4 306 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 PALM2Q8IXS6 379 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TTC30BQ8N4P2 665 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 FLCNQ8NFG4 579 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ATP6V1E2Q96A05 226 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TMA16Q96EY4 203 aaKnown RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF599Q96NL3 588 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 SLC29A1Q99808 456 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 WWP1Q9H0M0 922 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TTLL3Q9Y4R7 772 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 OR51B4Q9Y5P0 310 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 NEMP1O14524 444 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ALOX15BO15296 676 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 LINC01565O15544 149 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 B4GAT1O43505 415 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 KDELR3O43731 214 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CCNT2O60583 730 aaKnown RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TBL1XO60907 577 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 NDUFS2O75306 463 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 BMP10O95393 424 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 JCHAINP01591 159 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ITGAXP20702 1163 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 HADHAP40939 763 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 OPRL1P41146 370 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF177Q13360 481 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 MPPE1Q53F39 396 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 FNBP1LQ5T0N5 605 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 SDE2Q6IQ49 451 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 NEK5Q6P3R8 708 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TTC33Q6PID6 262 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 PID1Q7Z2X4 250 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 ESX1Q8N693 406 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TP53I13Q8NBR0 393 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 DACT3Q96B18 629 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-203ENST00000354674 MAGED4Q96JG8 741 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 LMLNQ96KR4 655 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 BIRC8Q96P09 236 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 CEP41Q9BYV8 373 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 TRPV4Q9HBA0 871 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 PCDHGA7Q9Y5G6 932 aa10.04□□□□□ -0.8
SYNE1-203ENST00000354674 A0A0D9SEW6 157 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 HOXB8P17481 243 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 PSMB4P28070 264 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 GABRB3P28472 473 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 MS4A2Q01362 244 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 ATAD3BQ5T9A4 648 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 CAND1Q86VP6 1230 aaKnown RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 CRLF3Q8IUI8 442 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 TDRD5Q8NAT2 981 aaKnown RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 E2F7Q96AV8 911 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 OTUB2Q96DC9 234 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 ALG14Q96F25 216 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 S1PR5Q9H228 398 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 IGFLR1Q9H665 355 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 VPS45Q9NRW7 570 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 CLEC1BQ9P126 229 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 KLHL8Q9P2G9 620 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 MYO7AQ13402 2215 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 SHROOM3Q8TF72 1996 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 KIF26AQ9ULI4 1882 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 LINC00854A0A1B0GVQ3 168 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 SAC3D1A6NKF1 404 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 RNASEH2AO75792 299 aaKnown RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 PRKCAP17252 672 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 PRKACAP17612 351 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 RENBPP51606 427 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 THOP1P52888 689 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 MRPS15P82914 257 aaKnown RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 HIF1AQ16665 826 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 FAXCQ5TGI0 409 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 CYP20A1Q6UW02 462 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 OTOP3Q7RTS5 596 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 KBTBD6Q86V97 674 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 NPAS3Q8IXF0 933 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 BANPQ8N9N5 519 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 FAM110BQ8TC76 370 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 ING5Q8WYH8 240 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 LRTOMTQ8WZ04 291 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 TADA1Q96BN2 335 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 MAP6Q96JE9 813 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 FCRL5Q96RD9 977 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 WDR83Q9BRX9 315 aaKnown RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 OSBPL11Q9BXB4 747 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 CLK4Q9HAZ1 481 aaKnown RBP10.03□□□□□ -0.8
SYNE1-203ENST00000354674 GDE1Q9NZC3 331 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 PSMD13Q9UNM6 376 aa10.03□□□□□ -0.8
SYNE1-203ENST00000354674 CXorf51AA0A1B0GTR3 108 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 GOLGA8CPA6NN73 597 aa10.02□□□□□ -0.8
SYNE1-203ENST00000354674 ERI2A8K979 691 aaKnown RBP10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms