RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 INPP5DQ92835 1189 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 TMEM237Q96Q45 408 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 DYRK4Q9NR20 520 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 NCKIPSDQ9NZQ3 722 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 KLHL42Q9P2K6 505 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 MARCOQ9UEW3 520 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 CKAP5Q14008 2032 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 WNT9AO14904 365 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 TPBGLP0DKB5 382 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 KITP10721 976 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 SMAD4Q13485 552 aaKnown RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 GALNTL6Q49A17 601 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 TMEM52BQ4KMG9 183 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 ARL13AQ5H913 290 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 FAM46CQ5VWP2 391 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 LSMEM2Q8N112 164 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 GBP7Q8N8V2 638 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 RAB7BQ96AH8 199 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 L3HYPDHQ96EM0 354 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 MOCOSQ96EN8 888 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 LINGO1Q96FE5 620 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 DTD2Q96FN9 168 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 VPS35Q96QK1 796 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 GAS2L1Q99501 681 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 RIOK2Q9BVS4 552 aaKnown RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 RSPH9Q9H1X1 276 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 ABCG8Q9H221 673 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 PNPOQ9NVS9 261 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 COLQQ9Y215 455 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-202ENST00000338045 RAP2CQ9Y3L5 183 aa15.29■□□□□ 0.04
LIMS1-202ENST00000338045 EYSQ5T1H1 3165 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 FADS2P1A8MWK0 482 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 ZNF195O14628 629 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 MBTPS2O43462 519 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 SLC25A14O95258 325 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 CHRNGP07510 517 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 PSMD8P48556 350 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 TSNQ15631 228 aaKnown RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 CRY1Q16526 586 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 ZNF284Q2VY69 593 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 ZNF765Q7L2R6 523 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 RALGPS2Q86X27 583 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 ZNF781Q8N8C0 355 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 DDHD1Q8NEL9 900 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 KCNV2Q8TDN2 545 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 FUBP1Q96AE4 644 aaKnown RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 CNDP1Q96KN2 507 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 LRRC37BQ96QE4 947 aa15.28■□□□□ 0.04
LIMS1-202ENST00000338045 ILKAPQ9H0C8 392 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 STN1Q9H668 368 aaKnown RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 SARS2Q9NP81 518 aaKnown RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 SPATS2LQ9NUQ6 558 aaKnown RBP15.28■□□□□ 0.04
LIMS1-202ENST00000338045 CDC7O00311 574 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 PLK4O00444 970 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 BTN3A1O00481 513 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 SMIM24O75264 130 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 IMPDH1P20839 514 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 DRD3P35462 400 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 P2RY2P41231 377 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 AQP5P55064 265 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 GALNT1Q10472 559 aaPredicted RBP15.27■□□□□ 0.04
LIMS1-202ENST00000338045 PRKAA1Q13131 559 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 ACOX1Q15067 660 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 SPRED3Q2MJR0 410 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 NAT14Q8WUY8 206 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 BTN2A2Q8WVV5 523 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 SKA1Q96BD8 255 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 PHF21BQ96EK2 531 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 PANX3Q96QZ0 392 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 WRAP53Q9BUR4 548 aaKnown RBP15.27■□□□□ 0.04
LIMS1-202ENST00000338045 WWP1Q9H0M0 922 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 KCNK12Q9HB15 430 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 CYP4F12Q9HCS2 524 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.27■□□□□ 0.04
LIMS1-202ENST00000338045 TRIOBPQ9H2D6 2365 aa15.27■□□□□ 0.04
LIMS1-202ENST00000338045 SYCE1LA8MT33 242 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 UBXN8O00124 270 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 KLK8O60259 260 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 TRIM16O95361 564 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 ATP1B2P14415 290 aaPredicted RBP15.27■□□□□ 0.03
LIMS1-202ENST00000338045 WASP42768 502 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 CCR10P46092 362 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 HK2P52789 917 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 HERVK_113P63132 956 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 CNTN1Q12860 1018 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 SETDB1Q15047 1291 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 SPDYAQ5MJ70 313 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 ZNF678Q5SXM1 525 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 PIP5KL1Q5T9C9 394 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 MAVSQ7Z434 540 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 SLC44A3Q8N4M1 653 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 ZBTB2Q8N680 514 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 CCNYL1Q8N7R7 359 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 DNASE1L2Q92874 299 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 AP2M1Q96CW1 435 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 GABRG3Q99928 467 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 TRMOQ9BU70 441 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 ERVK-6Q9BXR3 956 aa15.27■□□□□ 0.03
LIMS1-202ENST00000338045 C8orf33Q9H7E9 229 aaPredicted RBP15.27■□□□□ 0.03
LIMS1-202ENST00000338045 UBE2ZQ9H832 354 aaPredicted RBP15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms