RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZFP36L2P47974 494 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 ATP4BP51164 291 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 ISL1P61371 349 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 POU4F1Q01851 419 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 CCDC58Q4VC31 144 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 SULT1C3Q6IMI6 304 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 GALNT5Q7Z7M9 940 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 CNTN4Q8IWV2 1026 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 RHOXF1Q8NHV9 184 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 MCOLN3Q8TDD5 553 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 NACC2Q96BF6 587 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 ZBED3Q96IU2 234 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 GAD1Q99259 594 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 C17orf80Q9BSJ5 609 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 SLIRPQ9GZT3 109 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 ASB7Q9H672 318 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 PCM1Q15154 2024 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 MIA3Q5JRA6 1907 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 IGKV6-21A0A0C4DH24 114 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 A0A1W2PP18 115 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 FZD9O00144 591 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 AZIN1O14977 448 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 FTH1P02794 183 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 CHRNB1P11230 501 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 EIF2DP41214 584 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 POLD2P49005 469 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 IL1RL1Q01638 556 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 VAC14Q08AM6 782 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 SMN1Q16637 294 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 FAM214AQ32MH5 1076 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 FAM83AQ86UY5 434 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 BPHLQ86WA6 291 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 CCDC103Q8IW40 242 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 CDK5RAP1Q96SZ6 601 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 ACOX2Q99424 681 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 NPY6RQ99463 290 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 SEMA4BQ9NPR2 832 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 GINS2Q9Y248 185 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 HTTP42858 3142 aa13.34□□□□□ -0.27
CCDC88C-201ENST00000331194 TAF4O00268 1085 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 RAD51BO15315 384 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 PRSS23O95084 383 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 FADS2O95864 444 aaKnown RBP13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 LBPP18428 481 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 ITIH1P19827 911 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 KCNK10P57789 538 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 IL5RAQ01344 420 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 VARS2Q5ST30 1063 aaKnown RBP13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 HECTD2Q5U5R9 776 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 ITFG1Q8TB96 612 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 FIG4Q92562 907 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 RORBQ92753 470 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 ESAMQ96AP7 390 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 PABPC5Q96DU9 382 aaKnown RBP13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 HBEGFQ99075 208 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 GPR45Q9Y5Y3 372 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 CSADQ9Y600 493 aa13.33□□□□□ -0.27
CCDC88C-201ENST00000331194 ERI2A8K979 691 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 CCNKO75909 580 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 PTPRAP18433 802 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 ICAM3P32942 547 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 PPP5CP53041 499 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 SYTL1Q8IYJ3 562 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 TTC16Q8NEE8 873 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 ZNF555Q8NEP9 628 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 DMRTB1Q96MA1 342 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 TEX13BQ9BXU2 312 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 TRIM54Q9BYV2 358 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 LOC100130705A0A1B0GUX0 176 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 CCDC154A6NI56 674 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 AP3D1O14617 1153 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 UPK1BO75841 260 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 FYNP06241 537 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 MASP1P48740 699 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 CLK3P49761 638 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 RAPSNQ13702 412 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 TRIP4Q15650 581 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 P2RY8Q86VZ1 359 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 GOLM1Q8NBJ4 401 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 LEMD2Q8NC56 503 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 PIK3C3Q8NEB9 887 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 PPHLN1Q8NEY8 458 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 MCFD2Q8NI22 146 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 CCDC126Q96EE4 140 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 UBXN10Q96LJ8 280 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 C6orf62Q9GZU0 229 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 ZBTB20Q9HC78 741 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 C8orf4Q9NR00 106 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 HACD3Q9P035 362 aa13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 INTS6Q9UL03 887 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-201ENST00000331194 GNGT2O14610 69 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 PRMT5O14744 637 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 DYRK3O43781 588 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 IDH3BO43837 385 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 CST1P01037 141 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 GSNP06396 782 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 RBP1P09455 135 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 TXNP10599 105 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 UMPSP11172 480 aa13.32□□□□□ -0.28
CCDC88C-201ENST00000331194 KPNA2P52292 529 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 284 ms