RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 RGSL1A5PLK6 1076 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CHUKO15111 745 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 B4GAT1O43505 415 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 OPA1O60313 960 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CRTAMO95727 393 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 ALPPL2P10696 532 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 ACTN2P35609 894 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 OR1D5P58170 312 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CCL7P80098 99 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 C2orf54Q08AI8 447 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CDH17Q12864 832 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 ILF3Q12906 894 aaKnown RBP eCLIP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 HLTFQ14527 1009 aaKnown RBP eCLIP11.87□□□□□ -0.511e-7■□□□□ 9.6
SCFD1-201ENST00000311943 NR0B2Q15466 257 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TMEM220Q6QAJ8 160 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 USP53Q70EK8 1073 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 UNC5BQ8IZJ1 945 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 FSTL5Q8N475 847 aaPredicted RBP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 ARL10Q8N8L6 244 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 MDM1Q8TC05 714 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 SLC37A2Q8TED4 501 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 VPS35Q96QK1 796 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TRIM31Q9BZY9 425 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 NLE1Q9NVX2 485 aaPredicted RBP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TMEM9Q9P0T7 183 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 VPS18Q9P253 973 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 LRIT1Q9P2V4 623 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 NFKBIL1Q9UBC1 381 aaPredicted RBP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 ANGPTL2Q9UKU9 493 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 ZKSCAN5Q9Y2L8 839 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CTAGE9A4FU28 777 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 A6NCN8 305 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TTI1O43156 1089 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 GOT2P00505 430 aaKnown RBP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TCP1P17987 556 aaKnown RBP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 ARNTP27540 789 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 AKT1P31749 480 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CFHR1Q03591 330 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CAMK2BQ13554 666 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 COL9A2Q14055 689 aaPredicted RBP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CLCA4Q14CN2 919 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TRADDQ15628 312 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 INSCQ1MX18 579 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 INAVAQ3KP66 663 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 DUS1LQ6P1R4 473 aaKnown RBP11.87□□□□□ -0.51
SCFD1-201ENST00000311943 OGFOD3Q6PK18 319 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TAS2R42Q7RTR8 314 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 TMPRSS7Q7RTY8 843 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 SERPINA9Q86WD7 417 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 DUSP23Q9BVJ7 150 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 CDH19Q9H159 772 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 KCTD5Q9NXV2 234 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 KNTC1P50748 2209 aa11.87□□□□□ -0.51
SCFD1-201ENST00000311943 UNC13CQ8NB66 2214 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 IQCF5A8MTL0 148 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 TP73O15350 636 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 POP7O75817 140 aaKnown RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 HOXB3P14651 431 aaPredicted RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 MSNP26038 577 aaKnown RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 IVDP26440 423 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 ALDH4A1P30038 563 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 ETF1P62495 437 aaKnown RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 DBN1Q16643 649 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 AMZ1Q400G9 498 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 MSS51Q4VC12 460 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 C14orf28Q4W4Y0 310 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 HS1BP3Q53T59 392 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 TSTD2Q5T7W7 516 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 DDHD1Q8NEL9 900 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 MAPK15Q8TD08 544 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 MAIP1Q8WWC4 291 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 FCRL3Q96P31 734 aaPredicted RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 GSDMCQ9BYG8 508 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 ZNF624Q9P2J8 865 aaPredicted RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 CRLS1Q9UJA2 301 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 MAP1BP46821 2468 aaKnown RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 AGAP14A8MT82 685 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 JUPP14923 745 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 ZNF7P17097 686 aaPredicted RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 ITGB6P18564 788 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 FOXN2P32314 431 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 BRD3Q15059 726 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 C17orf82Q86X59 251 aaPredicted RBP11.86□□□□□ -0.51
SCFD1-201ENST00000311943 NXPE1Q8N323 547 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 GATA6Q92908 595 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 KRT12Q99456 494 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 KCND1Q9NSA2 647 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 TCAF1Q9Y4C2 921 aa11.86□□□□□ -0.51
SCFD1-201ENST00000311943 LOC400499M0QZD8 3231 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 ACACBO00763 2458 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 TRABD2BA6NFA1 517 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 PRR19A6NJB7 356 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 RPLP0P05388 317 aaKnown RBP11.85□□□□□ -0.51
SCFD1-201ENST00000311943 POLBP06746 335 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 HGFP14210 728 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 ZNF789Q5FWF6 425 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 CCNI2Q6ZMN8 369 aaPredicted RBP11.85□□□□□ -0.51
SCFD1-201ENST00000311943 LINC00523Q86TU6 105 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 LRRTM4Q86VH4 590 aa11.85□□□□□ -0.51
SCFD1-201ENST00000311943 IGDCC3Q8IVU1 814 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms