RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 MAF1Q9H063 256 aa12.75□□□□□ -0.37
COL3A1-201ENST00000304636 RAB23Q9ULC3 237 aa12.75□□□□□ -0.37
COL3A1-201ENST00000304636 TEX264Q9Y6I9 313 aa12.75□□□□□ -0.37
COL3A1-201ENST00000304636 KNDC1Q76NI1 1749 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 EFCAB9A8MZ26 197 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 SLC7A4O43246 635 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 UGT2B4P06133 528 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 CTPS1P17812 591 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 PTX3P26022 381 aaPredicted RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 MRPS6P82932 125 aaKnown RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 RASAL3Q86YV0 1011 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 CANT1Q8WVQ1 401 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 BTN2A3PQ96KV6 586 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 SLC9A7Q96T83 725 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 GPR20Q99678 358 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 PMF1-BGLAPU3KQ54 211 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 STK25O00506 426 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 STK16O75716 305 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 OR6A2O95222 327 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 ECDO95905 644 aaPredicted RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 RHOQP17081 205 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 AQP1P29972 269 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 ACADVLP49748 655 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 GMFBP60983 142 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 BNIP3Q12983 259 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 GTF2H2Q13888 395 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 ZNF829Q3KNS6 432 aaPredicted RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 GTF2H2CQ6P1K8 395 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 ZDHHC21Q8IVQ6 265 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 KCTD5Q9NXV2 234 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 PCDHB9Q9Y5E1 797 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 E9PAM4 449 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 TYROBPO43914 113 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 CERS6Q6ZMG9 384 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 TIFABQ6ZNK6 161 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 KRT77Q7Z794 578 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 LDB1Q86U70 411 aaPredicted RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 NDRG1Q92597 394 aaKnown RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 NSMCE3Q96MG7 304 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 PDZD7Q9H5P4 517 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 CNTN3Q9P232 1028 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 OAZ3Q9UMX2 235 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 SLC30A4O14863 429 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 SLC28A2O43868 658 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 DLDP09622 509 aaKnown RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 IMPDH1P20839 514 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 IL1R2P27930 398 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 MOGQ16653 247 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 NEK5Q6P3R8 708 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.74□□□□□ -0.37
COL3A1-201ENST00000304636 PDCD10Q9BUL8 212 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 ABCB9Q9NP78 766 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 GMEB1Q9Y692 573 aa12.74□□□□□ -0.37
COL3A1-201ENST00000304636 CNTNAP1P78357 1384 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 SMIM28A0A1B0GU29 152 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 FAM92AA1XBS5 289 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 FAM189A1O60320 539 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 NOBOXO60393 691 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TBL1XO60907 577 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 BCAS2O75934 225 aaPredicted RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 SLC25A14O95258 325 aaPredicted RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 POLR2EP19388 210 aaKnown RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 SLC1A2P43004 574 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 ABRQ12979 859 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 PLEKHG6Q3KR16 790 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 GCNT6Q5T4J0 391 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 GPR65Q8IYL9 337 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 ZBTB2Q8N680 514 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 HJURPQ8NCD3 748 aaPredicted RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 RASSF5Q8WWW0 418 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 DNAJC11Q9NVH1 559 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 ZNF358Q9NW07 568 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TMEM9Q9P0T7 183 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 KPNA3O00505 521 aaPredicted RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TBX1O43435 398 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 OR4F21O95013 312 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 C8BP07358 591 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 ALDH4A1P30038 563 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TLX1P31314 330 aaPredicted RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 BUD31P41223 144 aaPredicted RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 RHDQ02161 417 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 PIK3R6Q5UE93 754 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 SLC13A3Q8WWT9 602 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 HSPBAP1Q96EW2 488 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 HNRNPABQ99729 332 aaKnown RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 COPS4Q9BT78 406 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 EHD1Q9H4M9 534 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 PGLSO95336 258 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 PRPS2P11908 318 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 TNNI3P19429 210 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 CACNG1Q06432 222 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 VGLL4Q14135 290 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 NIPAL1Q6NVV3 410 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 DSG4Q86SJ6 1040 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 ZC3H3Q8IXZ2 948 aaKnown RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 MEIOBQ8N635 442 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 C11orf65Q8NCR3 313 aa12.73□□□□□ -0.37
COL3A1-201ENST00000304636 AARSD1Q9BTE6 412 aaKnown RBP12.73□□□□□ -0.37
COL3A1-201ENST00000304636 RACGAP1Q9H0H5 632 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms