RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SUV39H1O43463 412 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 SPOPO43791 374 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 PMPCBO75439 489 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 RASSF9O75901 435 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 UBXN7O94888 489 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 NDST3O95803 873 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 ANKRD34CP0C6C1 535 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 ZNF7P17097 686 aaPredicted RBP12.57□□□□□ -0.4
CD44-203ENST00000278386 RPL10P27635 214 aaKnown RBP12.57□□□□□ -0.4
CD44-203ENST00000278386 ARHGAP25P42331 645 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 SEPHS1P49903 392 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 CLCNKAP51800 687 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 ABHD18Q0P651 414 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 SLC14A2Q15849 920 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 TMEM26Q6ZUK4 368 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 TIPARPQ7Z3E1 657 aaKnown RBP12.57□□□□□ -0.4
CD44-203ENST00000278386 TMC3Q7Z5M5 1100 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 TRAPPC5Q8IUR0 188 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 RHOT1Q8IXI2 618 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 STARD8Q92502 1023 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 CXorf40BQ96DE9 158 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 C9orf72Q96LT7 481 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 CCDC42Q96M95 316 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 ULBP3Q9BZM4 244 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 TRIT1Q9H3H1 467 aaKnown RBP12.57□□□□□ -0.4
CD44-203ENST00000278386 UCK1Q9HA47 277 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 GLOD4Q9HC38 313 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 POT1Q9NUX5 634 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 DDX56Q9NY93 547 aaKnown RBP12.57□□□□□ -0.4
CD44-203ENST00000278386 TRIM10Q9UDY6 481 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 HYOU1Q9Y4L1 999 aa12.57□□□□□ -0.4
CD44-203ENST00000278386 TMEM184BQ9Y519 407 aaPredicted RBP12.57□□□□□ -0.4
CD44-203ENST00000278386 CHUKO15111 745 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 NKX2-8O15522 239 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 ARHGAP6O43182 974 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 VEGFDO43915 354 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 MFAP3LO75121 409 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 CDK14O94921 469 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 DLGAP3O95886 979 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 VCLP18206 1134 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 XRCC1P18887 633 aaPredicted RBP12.56□□□□□ -0.4
CD44-203ENST00000278386 PTPN3P26045 913 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 SLC19A1P41440 591 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 DRG2P55039 364 aaKnown RBP12.56□□□□□ -0.4
CD44-203ENST00000278386 NOMO1Q15155 1222 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 TEX44Q53QW1 395 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 KAZNQ674X7 775 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 C16orf46Q6P387 395 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 MFSD7Q6UXD7 560 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 RASGRP3Q8IV61 690 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 ESX1Q8N693 406 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 C9orf43Q8TAL5 461 aaPredicted RBP12.56□□□□□ -0.4
CD44-203ENST00000278386 RSC1A1Q92681 617 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 TTC25Q96NG3 672 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 SRPK1Q96SB4 655 aaKnown RBP12.56□□□□□ -0.4
CD44-203ENST00000278386 CHP1Q99653 195 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 NHEJ1Q9H9Q4 299 aaPredicted RBP12.56□□□□□ -0.4
CD44-203ENST00000278386 SIDT1Q9NXL6 827 aaKnown RBP12.56□□□□□ -0.4
CD44-203ENST00000278386 OGFRQ9NZT2 677 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 KLHL8Q9P2G9 620 aaPredicted RBP12.56□□□□□ -0.4
CD44-203ENST00000278386 SLC23A2Q9UGH3 650 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 SPO11Q9Y5K1 396 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 RPS6KL1Q9Y6S9 549 aa12.56□□□□□ -0.4
CD44-203ENST00000278386 OR52A4PA6NMU1 304 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 AURKAO14965 403 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 C9P02748 559 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 NFKB1P19838 968 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 TCN2P20062 427 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 IDSP22304 550 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 OAS2P29728 719 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 STAT5AP42229 794 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 HALP42357 657 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 SLC1A1P43005 524 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 CAPZBP47756 277 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 LEPRP48357 1165 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 MC1RQ01726 317 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 TLE1Q04724 770 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 PRKD1Q15139 912 aaPredicted RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 LLGL1Q15334 1064 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 DEFB109BQ30KR1 87 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 ATP13A5Q4VNC0 1218 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 KHDC1Q4VXA5 237 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 LRRC38Q5VT99 294 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 IRGCQ6NXR0 463 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 BZW1Q7L1Q6 419 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 SLC25A41Q8N5S1 370 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 TFB1MQ8WVM0 346 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 HAUS1Q96CS2 278 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 STAMBPL1Q96FJ0 436 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 ELMO2Q96JJ3 720 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 VPS35Q96QK1 796 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 OR6C1Q96RD1 312 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 ZCCHC2Q9C0B9 1178 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 ZNF768Q9H5H4 540 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 ZNF624Q9P2J8 865 aaPredicted RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 FAM153AQ9UHL3 310 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 TUBD1Q9UJT1 453 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 MRPS18BQ9Y676 258 aaKnown RBP12.55□□□□□ -0.4
CD44-203ENST00000278386 SLC30A1Q9Y6M5 507 aa12.55□□□□□ -0.4
CD44-203ENST00000278386 PSTPIP1O43586 416 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms