RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FADS2P1A8MWK0 482 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 K7ESM1 405 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 UBFD1O14562 309 aaKnown RBP16.31■□□□□ 0.2
USP4-201ENST00000265560 MMP20O60882 483 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 VIPR1P32241 457 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 KPNA2P52292 529 aaKnown RBP16.31■□□□□ 0.2
USP4-201ENST00000265560 ACTN3Q08043 901 aaPredicted RBP16.31■□□□□ 0.2
USP4-201ENST00000265560 RALGDSQ12967 914 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 GPRC6AQ5T6X5 926 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 TREML1Q86YW5 311 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 SKA1Q96BD8 255 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 ATOH8Q96SQ7 321 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 CDH19Q9H159 772 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 MID2Q9UJV3 735 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 SLC12A4Q9UP95 1085 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 PLXNB3Q9ULL4 1909 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 HK3P52790 923 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 PRKAA2P54646 552 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 SKA2Q8WVK7 121 aaPredicted RBP16.31■□□□□ 0.2
USP4-201ENST00000265560 KCNJ9Q92806 393 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 COPS8Q99627 209 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 TMEM245Q9H330 911 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 VPS9D1Q9Y2B5 631 aa16.31■□□□□ 0.2
USP4-201ENST00000265560 SPINT1O43278 529 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 RPL14P50914 215 aaKnown RBP16.3■□□□□ 0.2
USP4-201ENST00000265560 HSPA14Q0VDF9 509 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 LACTB2Q53H82 288 aaPredicted RBP16.3■□□□□ 0.2
USP4-201ENST00000265560 LIPIQ6XZB0 460 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 CERS6Q6ZMG9 384 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 OR8D1Q8WZ84 308 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 EZH1Q92800 747 aaPredicted RBP16.3■□□□□ 0.2
USP4-201ENST00000265560 PLCD4Q9BRC7 762 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 ZMYND15Q9H091 742 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 SEMA4BQ9NPR2 832 aaPredicted RBP16.3■□□□□ 0.2
USP4-201ENST00000265560 CIDEBQ9UHD4 219 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 PPM1HQ9ULR3 514 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 CORO1CQ9ULV4 474 aaPredicted RBP16.3■□□□□ 0.2
USP4-201ENST00000265560 PTGDR2Q9Y5Y4 395 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 TICRRQ7Z2Z1 1910 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 CCDC189A1A4V9 331 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 PAPLNO95428 1278 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 ENO1P06733 434 aaKnown RBP16.3■□□□□ 0.2
USP4-201ENST00000265560 ITPRIPL2Q3MIP1 535 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 TMEM198Q66K66 360 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 NXNQ6DKJ4 435 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 PRSS16Q9NQE7 514 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 ADAMTS6Q9UKP5 1117 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 COL4A3Q01955 1670 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 TRBV5-4A0A0C4DH59 114 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 ATP6AP2A0A1C7CYW4 349 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 ATP6AP2O75787 350 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 CD72P21854 359 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 BOP1Q14137 746 aaKnown RBP16.3■□□□□ 0.2
USP4-201ENST00000265560 CTC1Q2NKJ3 1217 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 UNC50Q53HI1 259 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 MBOAT1Q6ZNC8 495 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 RIPOR3Q96MK2 946 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 KCNA7Q96RP8 456 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 WWP1Q9H0M0 922 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 PKD2L2Q9NZM6 624 aa16.3■□□□□ 0.2
USP4-201ENST00000265560 EDDM13A0A1B0GTR0 161 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 PRR5-ARHGAP8B1AHC4 643 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 SMIM24O75264 130 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 ARHGAP8P85298 464 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 FBXW10Q5XX13 1052 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 LCA5Q86VQ0 697 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 POU5F2Q8N7G0 328 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 SNX31Q8N9S9 440 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 STAG3L4Q8TBR4 150 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 TRPC4APQ8TEL6 797 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 KIAA1191Q96A73 305 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 ELSPBP1Q96BH3 223 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 KLHL29Q96CT2 875 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 DERL2Q9GZP9 239 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 LATS2Q9NRM7 1088 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 CD274Q9NZQ7 290 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 APOBEC2Q9Y235 224 aaKnown RBP16.29■□□□□ 0.2
USP4-201ENST00000265560 STK38LQ9Y2H1 464 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 RAP2CQ9Y3L5 183 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 TMEM114B3SHH9 223 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 GRID2O43424 1007 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 ASGR2P07307 311 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 CYP2A6P11509 494 aaPredicted RBP16.29■□□□□ 0.2
USP4-201ENST00000265560 EEF1DP29692 281 aaKnown RBP16.29■□□□□ 0.2
USP4-201ENST00000265560 MMP12P39900 470 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 TUBB3Q13509 450 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 ZNF678Q5SXM1 525 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 PLPP6Q8IY26 295 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 CBARPQ8N350 705 aaPredicted RBP16.29■□□□□ 0.2
USP4-201ENST00000265560 ZNF513Q8N8E2 541 aaPredicted RBP16.29■□□□□ 0.2
USP4-201ENST00000265560 FBXO27Q8NI29 283 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 AP2M1Q96CW1 435 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 TTC1Q99614 292 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 GSTO2Q9H4Y5 243 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 HEBP1Q9NRV9 189 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 OBP2AQ9NY56 170 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 LIMD1Q9UGP4 676 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 GNPTGQ9UJJ9 305 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 DHRS7Q9Y394 339 aa16.29■□□□□ 0.2
USP4-201ENST00000265560 PRNPP04156 253 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms