RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 ARID2Q68CP9 1835 aa12.92□□□□□ -0.34
MSH2-201ENST00000233146 FXYD1O00168 92 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ALPPP05187 535 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 RGS7P49802 495 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 CPT1AP50416 773 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 PTPN5P54829 565 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 FCGRTP55899 365 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ERVK-21P61565 698 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 CRADDP78560 199 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 RGS1Q08116 209 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 CDK5R2Q13319 367 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 WDR44Q5JSH3 913 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ZNF691Q5VV52 312 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 CASC4Q6P4E1 433 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 AADATQ8N5Z0 425 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 MXRA8Q9BRK3 442 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 GTPBP2Q9BX10 602 aaKnown RBP12.91□□□□□ -0.34
MSH2-201ENST00000233146 ST6GALNAC4Q9H4F1 302 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 IFT46Q9NQC8 304 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 SCML1Q9UN30 329 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 LYVE1Q9Y5Y7 322 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 DICER1Q9UPY3 1922 aaKnown RBP12.91□□□□□ -0.34
MSH2-201ENST00000233146 BBIP1A8MTZ0 92 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 PSMD10O75832 226 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 SLC6A2P23975 617 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 KLRK1P26718 216 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 PPP4CP60510 307 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 SLC35A2P78381 396 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 AANATQ16613 207 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 SETMARQ53H47 684 aaPredicted RBP12.91□□□□□ -0.34
MSH2-201ENST00000233146 FSTL4Q6MZW2 842 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ZNF516Q92618 1163 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 UROC1Q96N76 676 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ERVK13-1Q9NX77 482 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ZNF224Q9NZL3 707 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 MAFFQ9ULX9 164 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 UTRNP46939 3433 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 PRMT5O14744 637 aaPredicted RBP12.91□□□□□ -0.34
MSH2-201ENST00000233146 PGLSO95336 258 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 S100A6P06703 90 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 SUPT20HL2P0C7V6 817 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ERVK-10P10266 1014 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 PCSK2P16519 638 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ITGB6P18564 788 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 CHRM3P20309 590 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 RYKP34925 604 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 SPRP35270 261 aaPredicted RBP12.91□□□□□ -0.34
MSH2-201ENST00000233146 KCNAB2Q13303 367 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 CUL2Q13617 745 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 KCNC3Q14003 757 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 QRICH1Q2TAL8 776 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 TIGD7Q6NT04 549 aaPredicted RBP12.91□□□□□ -0.34
MSH2-201ENST00000233146 TLK2Q86UE8 772 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 GPALPP1Q8IXQ4 340 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 EMC1Q8N766 993 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 AKAP1Q92667 903 aaKnown RBP eCLIP12.91□□□□□ -0.34
MSH2-201ENST00000233146 SEPHS2Q99611 448 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 TMEM168Q9H0V1 697 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 OR51B5Q9H339 312 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 MEAF6Q9HAF1 191 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 CYP3A43Q9HB55 503 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ACOT13Q9NPJ3 140 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ELF5Q9UKW6 265 aaPredicted RBP12.91□□□□□ -0.34
MSH2-201ENST00000233146 FZD1Q9UP38 647 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 ANKRD6Q9Y2G4 727 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 KLHL20Q9Y2M5 609 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 HSPB11Q9Y547 144 aa12.91□□□□□ -0.34
MSH2-201ENST00000233146 NRCAMQ92823 1304 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 ADGRA2Q96PE1 1338 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 TFECO14948 347 aaPredicted RBP12.9□□□□□ -0.34
MSH2-201ENST00000233146 STX7O15400 261 aaKnown RBP12.9□□□□□ -0.34
MSH2-201ENST00000233146 RETP07949 1114 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 CCNYL3P0C7X3 344 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 JUNDP17535 347 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 LIMK2P53671 638 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 TFDP2Q14188 446 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 NKX1-1Q15270 411 aaPredicted RBP12.9□□□□□ -0.34
MSH2-201ENST00000233146 SMAD1Q15797 465 aaKnown RBP12.9□□□□□ -0.34
MSH2-201ENST00000233146 CACHD1Q5VU97 1274 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 CORO6Q6QEF8 472 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 JOSD2Q8TAC2 188 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 ARNTL2Q8WYA1 636 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 B3GALT6Q96L58 329 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 KLHL15Q96M94 604 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 MMP28Q9H239 520 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 CATSPERBQ9H7T0 1116 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 CAB39LQ9H9S4 337 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 BFARQ9NZS9 450 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 PCDHA9Q9Y5H5 950 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 SLX4Q8IY92 1834 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 IGLV3-22A0A075B6J6 115 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 LOC100130705A0A1B0GUX0 176 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 RGS5O15539 181 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 LSM8O95777 96 aaKnown RBP12.9□□□□□ -0.34
MSH2-201ENST00000233146 NCK1P16333 377 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 PGAM1P18669 254 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 ITGALP20701 1170 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 HLA-DMAP28067 261 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 CENPAP49450 140 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 MVKQ03426 396 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms