RNA–Protein interactions for RNA: ENST00000641371.1

PHGDH-215, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 725 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-215ENST00000641371 CHL1O00533 1208 aa12.48□□□□□ -0.41
PHGDH-215ENST00000641371 MTHFSDQ2M296 383 aaKnown RBP12.48□□□□□ -0.41
PHGDH-215ENST00000641371 ZKSCAN2Q63HK3 967 aa12.48□□□□□ -0.41
PHGDH-215ENST00000641371 ARHGAP45Q92619 1136 aa12.47□□□□□ -0.41
PHGDH-215ENST00000641371 TSR2Q969E8 191 aaKnown RBP12.47□□□□□ -0.41
PHGDH-215ENST00000641371 LTV1Q96GA3 475 aaPredicted RBP12.47□□□□□ -0.41
PHGDH-215ENST00000641371 SMC4Q9NTJ3 1288 aa12.47□□□□□ -0.41
PHGDH-215ENST00000641371 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.47□□□□□ -0.41
PHGDH-215ENST00000641371 CACNA1FO60840 1977 aa12.47□□□□□ -0.41
PHGDH-215ENST00000641371 CRB1P82279 1406 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 ABCA3Q99758 1704 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 BCAR3O75815 825 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 AKAP4Q5JQC9 854 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 NBPF6Q5VWK0 638 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 EXOC6Q8TAG9 804 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 CERKQ8TCT0 537 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 NBPF4Q96M43 638 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 CRBNQ96SW2 442 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 MBIPQ9NS73 344 aa12.46□□□□□ -0.41
PHGDH-215ENST00000641371 LAS1LQ9Y4W2 734 aaKnown RBP12.46□□□□□ -0.41
PHGDH-215ENST00000641371 RGPD5Q99666 1765 aa12.46□□□□□ -0.42
PHGDH-215ENST00000641371 ZBTB7CA1YPR0 619 aa12.45□□□□□ -0.42
PHGDH-215ENST00000641371 PLIN1O60240 522 aa12.45□□□□□ -0.42
PHGDH-215ENST00000641371 LRRC59Q96AG4 307 aaKnown RBP12.45□□□□□ -0.42
PHGDH-215ENST00000641371 RGPD2P0DJD1 1756 aa12.45□□□□□ -0.42
PHGDH-215ENST00000641371 ZC3H6P61129 1189 aaKnown RBP12.44□□□□□ -0.42
PHGDH-215ENST00000641371 TWISTNBQ3B726 338 aaPredicted RBP12.44□□□□□ -0.42
PHGDH-215ENST00000641371 C1orf141Q5JVX7 400 aa12.44□□□□□ -0.42
PHGDH-215ENST00000641371 B4GALNT3Q6L9W6 998 aa12.44□□□□□ -0.42
PHGDH-215ENST00000641371 FTSJ3Q8IY81 847 aaKnown RBP12.44□□□□□ -0.42
PHGDH-215ENST00000641371 RAPGEF4Q8WZA2 1011 aa12.44□□□□□ -0.42
PHGDH-215ENST00000641371 COL22A1Q8NFW1 1626 aaPredicted RBP12.44□□□□□ -0.42
PHGDH-215ENST00000641371 ROBO1Q9Y6N7 1651 aa12.43□□□□□ -0.42
PHGDH-215ENST00000641371 VAMP4O75379 141 aa12.43□□□□□ -0.42
PHGDH-215ENST00000641371 ATF7IPQ6VMQ6 1270 aa12.43□□□□□ -0.42
PHGDH-215ENST00000641371 DZIP1LQ8IYY4 767 aaKnown RBP12.43□□□□□ -0.42
PHGDH-215ENST00000641371 TSPYL4Q9UJ04 414 aa12.43□□□□□ -0.42
PHGDH-215ENST00000641371 CEMIPQ8WUJ3 1361 aa12.43□□□□□ -0.42
PHGDH-215ENST00000641371 FAM83GA6ND36 823 aa12.42□□□□□ -0.42
PHGDH-215ENST00000641371 HSP90AB1P08238 724 aaKnown RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 CSB-PGBD3P0DP91 1061 aa12.42□□□□□ -0.42
PHGDH-215ENST00000641371 TATP17735 454 aaPredicted RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 TAF7Q15545 349 aaPredicted RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 CENPQQ7L2Z9 268 aaPredicted RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 SSH1Q8WYL5 1049 aa12.42□□□□□ -0.42
PHGDH-215ENST00000641371 FRAT1Q92837 279 aaPredicted RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 DDX17Q92841 729 aaKnown RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 THUMPD2Q9BTF0 503 aaKnown RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 PRDM11Q9NQV5 511 aa12.42□□□□□ -0.42
PHGDH-215ENST00000641371 DDX19BQ9UMR2 479 aa12.42□□□□□ -0.42
PHGDH-215ENST00000641371 SPG7Q9UQ90 795 aa12.42□□□□□ -0.42
PHGDH-215ENST00000641371 PARP4Q9UKK3 1724 aaKnown RBP12.42□□□□□ -0.42
PHGDH-215ENST00000641371 TOM1O60784 492 aa12.41□□□□□ -0.42
PHGDH-215ENST00000641371 HOXB7P09629 217 aa12.41□□□□□ -0.42
PHGDH-215ENST00000641371 ZNF530Q6P9A1 599 aaPredicted RBP12.41□□□□□ -0.42
PHGDH-215ENST00000641371 MCM10Q7L590 875 aa12.41□□□□□ -0.42
PHGDH-215ENST00000641371 API5Q9BZZ5 524 aaKnown RBP12.41□□□□□ -0.42
PHGDH-215ENST00000641371 ADAMTS7Q9UKP4 1686 aa12.41□□□□□ -0.42
PHGDH-215ENST00000641371 WDR17Q8IZU2 1322 aa12.4□□□□□ -0.42
PHGDH-215ENST00000641371 PKD1L3Q7Z443 1732 aa12.4□□□□□ -0.42
PHGDH-215ENST00000641371 DCTN1Q14203 1278 aa12.4□□□□□ -0.42
PHGDH-215ENST00000641371 MVPQ14764 893 aaKnown RBP12.4□□□□□ -0.42
PHGDH-215ENST00000641371 NLRP2Q9NX02 1062 aa12.4□□□□□ -0.42
PHGDH-215ENST00000641371 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
PHGDH-215ENST00000641371 COL14A1Q05707 1796 aaKnown RBP12.4□□□□□ -0.42
PHGDH-215ENST00000641371 PTPRCP08575 1304 aa12.39□□□□□ -0.43
PHGDH-215ENST00000641371 VIRMAQ69YN4 1812 aaKnown RBP12.39□□□□□ -0.43
PHGDH-215ENST00000641371 TEFQ10587 303 aa12.39□□□□□ -0.43
PHGDH-215ENST00000641371 C20orf194Q5TEA3 1177 aa12.39□□□□□ -0.43
PHGDH-215ENST00000641371 MRPL50Q8N5N7 158 aaKnown RBP12.39□□□□□ -0.43
PHGDH-215ENST00000641371 CLUAP1Q96AJ1 413 aa12.39□□□□□ -0.43
PHGDH-215ENST00000641371 USHBP1Q8N6Y0 703 aa12.38□□□□□ -0.43
PHGDH-215ENST00000641371 COL5A2P05997 1499 aaPredicted RBP12.38□□□□□ -0.43
PHGDH-215ENST00000641371 KDM3BQ7LBC6 1761 aa12.38□□□□□ -0.43
PHGDH-215ENST00000641371 TRIM27P14373 513 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 CCDC30Q5VVM6 783 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 IFNL2Q8IZJ0 200 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 IL17REQ8NFR9 667 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 CABLES1Q8TDN4 633 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 CARD10Q9BWT7 1032 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 BCL2L13Q9BXK5 485 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 NOB1Q9ULX3 412 aaKnown RBP12.37□□□□□ -0.43
PHGDH-215ENST00000641371 SCN11AQ9UI33 1791 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 PHLPP1O60346 1717 aa12.37□□□□□ -0.43
PHGDH-215ENST00000641371 RNMTO43148 476 aaKnown RBP12.36□□□□□ -0.43
PHGDH-215ENST00000641371 C8orf58Q8NAV2 365 aa12.36□□□□□ -0.43
PHGDH-215ENST00000641371 STK31Q9BXU1 1019 aa12.36□□□□□ -0.43
PHGDH-215ENST00000641371 COG6Q9Y2V7 657 aa12.36□□□□□ -0.43
PHGDH-215ENST00000641371 SIPA1L3O60292 1781 aaPredicted RBP12.35□□□□□ -0.43
PHGDH-215ENST00000641371 CHRNA2Q15822 529 aa12.35□□□□□ -0.43
PHGDH-215ENST00000641371 TSPYL6Q8N831 410 aa12.35□□□□□ -0.43
PHGDH-215ENST00000641371 PANK1Q8TE04 598 aa12.35□□□□□ -0.43
PHGDH-215ENST00000641371 ABCC4O15439 1325 aa12.35□□□□□ -0.43
PHGDH-215ENST00000641371 KDM2BQ8NHM5 1336 aa12.35□□□□□ -0.43
PHGDH-215ENST00000641371 MRC1P22897 1456 aa12.34□□□□□ -0.43
PHGDH-215ENST00000641371 COL16A1Q07092 1604 aaPredicted RBP12.34□□□□□ -0.43
PHGDH-215ENST00000641371 TCERG1O14776 1098 aaKnown RBP12.34□□□□□ -0.43
PHGDH-215ENST00000641371 EVA1CP58658 441 aa12.34□□□□□ -0.43
PHGDH-215ENST00000641371 TOM1L2Q6ZVM7 507 aa12.34□□□□□ -0.43
PHGDH-215ENST00000641371 DCAF5Q96JK2 942 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms