RNA–Protein interactions for RNA: ENST00000641272.1

PHGDH-213, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-213ENST00000641272 QSER1Q2KHR3 1735 aa23.32■■□□□ 1.32
PHGDH-213ENST00000641272 YY1P25490 414 aa23.31■■□□□ 1.32
PHGDH-213ENST00000641272 KCNQ4P56696 695 aa23.31■■□□□ 1.32
PHGDH-213ENST00000641272 NBPF6Q5VWK0 638 aa23.31■■□□□ 1.32
PHGDH-213ENST00000641272 NBPF4Q96M43 638 aa23.31■■□□□ 1.32
PHGDH-213ENST00000641272 MTFR1LQ9H019 292 aa23.3■■□□□ 1.32
PHGDH-213ENST00000641272 FLT4P35916 1363 aa23.29■■□□□ 1.32
PHGDH-213ENST00000641272 PRIM1P49642 420 aaKnown RBP23.29■■□□□ 1.32
PHGDH-213ENST00000641272 ZCRB1Q8TBF4 217 aaKnown RBP23.29■■□□□ 1.32
PHGDH-213ENST00000641272 PCGF6Q9BYE7 350 aa23.29■■□□□ 1.32
PHGDH-213ENST00000641272 ANKRD26Q9UPS8 1709 aa23.29■■□□□ 1.32
PHGDH-213ENST00000641272 CDCA8Q53HL2 280 aa23.28■■□□□ 1.32
PHGDH-213ENST00000641272 HSP90AB2PQ58FF8 381 aa23.28■■□□□ 1.32
PHGDH-213ENST00000641272 TOGARAM1Q9Y4F4 1720 aa23.28■■□□□ 1.32
PHGDH-213ENST00000641272 DCAF8L1A6NGE4 600 aa23.27■■□□□ 1.32
PHGDH-213ENST00000641272 FHDC1Q9C0D6 1143 aaPredicted RBP23.27■■□□□ 1.32
PHGDH-213ENST00000641272 INSRP06213 1382 aa23.27■■□□□ 1.31
PHGDH-213ENST00000641272 SGIP1Q9BQI5 828 aa23.26■■□□□ 1.31
PHGDH-213ENST00000641272 CARD14Q9BXL6 1004 aa23.26■■□□□ 1.31
PHGDH-213ENST00000641272 EMILIN1Q9Y6C2 1016 aa23.26■■□□□ 1.31
PHGDH-213ENST00000641272 PKD1L3Q7Z443 1732 aa23.25■■□□□ 1.31
PHGDH-213ENST00000641272 RAPGEF4Q8WZA2 1011 aa23.25■■□□□ 1.31
PHGDH-213ENST00000641272 POLR3GLQ9BT43 218 aa23.25■■□□□ 1.31
PHGDH-213ENST00000641272 AKT1S1Q96B36 256 aa23.24■■□□□ 1.31
PHGDH-213ENST00000641272 C5P01031 1676 aa23.23■■□□□ 1.31
PHGDH-213ENST00000641272 TATP17735 454 aaPredicted RBP23.23■■□□□ 1.31
PHGDH-213ENST00000641272 SLC27A3Q5K4L6 730 aa23.23■■□□□ 1.31
PHGDH-213ENST00000641272 PNPLA7Q6ZV29 1317 aa23.22■■□□□ 1.31
PHGDH-213ENST00000641272 SYT17Q9BSW7 474 aa23.21■■□□□ 1.31
PHGDH-213ENST00000641272 MAP2P11137 1827 aaKnown RBP23.21■■□□□ 1.31
PHGDH-213ENST00000641272 ITGB4P16144 1822 aa23.2■■□□□ 1.3
PHGDH-213ENST00000641272 COL24A1Q17RW2 1714 aa23.2■■□□□ 1.3
PHGDH-213ENST00000641272 KIF24Q5T7B8 1368 aa23.2■■□□□ 1.3
PHGDH-213ENST00000641272 PPM1GO15355 546 aaPredicted RBP23.2■■□□□ 1.3
PHGDH-213ENST00000641272 KLHL34Q8N239 644 aa23.2■■□□□ 1.3
PHGDH-213ENST00000641272 ARXQ96QS3 562 aa23.2■■□□□ 1.3
PHGDH-213ENST00000641272 CCNL1Q9UK58 526 aaPredicted RBP23.2■■□□□ 1.3
PHGDH-213ENST00000641272 PCDH11XQ9BZA7 1347 aa23.19■■□□□ 1.3
PHGDH-213ENST00000641272 PCDH11YQ9BZA8 1340 aa23.19■■□□□ 1.3
PHGDH-213ENST00000641272 TFCP2L1Q9NZI6 479 aa23.19■■□□□ 1.3
PHGDH-213ENST00000641272 CGNL1Q0VF96 1302 aa23.18■■□□□ 1.3
PHGDH-213ENST00000641272 TAF1LQ8IZX4 1826 aa23.17■■□□□ 1.3
PHGDH-213ENST00000641272 CLSPNQ9HAW4 1339 aa23.15■■□□□ 1.3
PHGDH-213ENST00000641272 TIMELESSQ9UNS1 1208 aa23.15■■□□□ 1.3
PHGDH-213ENST00000641272 NCAPD2Q15021 1401 aa23.15■■□□□ 1.3
PHGDH-213ENST00000641272 CYP27B1O15528 508 aa23.14■■□□□ 1.29
PHGDH-213ENST00000641272 PALLDQ8WX93 1383 aa23.14■■□□□ 1.29
PHGDH-213ENST00000641272 MAP3K5Q99683 1374 aa23.13■■□□□ 1.29
PHGDH-213ENST00000641272 CHD4Q14839 1912 aa23.12■■□□□ 1.29
PHGDH-213ENST00000641272 MSH5O43196 834 aa23.12■■□□□ 1.29
PHGDH-213ENST00000641272 TNNT2P45379 298 aaPredicted RBP23.12■■□□□ 1.29
PHGDH-213ENST00000641272 MPRIPQ6WCQ1 1025 aa23.12■■□□□ 1.29
PHGDH-213ENST00000641272 POLD1P28340 1107 aa23.11■■□□□ 1.29
PHGDH-213ENST00000641272 C4BP0C0L5 1744 aa23.11■■□□□ 1.29
PHGDH-213ENST00000641272 SLC16A10Q8TF71 515 aa23.1■■□□□ 1.29
PHGDH-213ENST00000641272 HSPA5P11021 654 aaKnown RBP23.09■■□□□ 1.29
PHGDH-213ENST00000641272 MSL1Q68DK7 614 aa23.09■■□□□ 1.29
PHGDH-213ENST00000641272 WASHC2AQ641Q2 1341 aa23.08■■□□□ 1.28
PHGDH-213ENST00000641272 COL23A1Q86Y22 540 aaPredicted RBP23.07■■□□□ 1.28
PHGDH-213ENST00000641272 PELP1Q8IZL8 1130 aaKnown RBP23.07■■□□□ 1.28
PHGDH-213ENST00000641272 EYA1Q99502 592 aa23.07■■□□□ 1.28
PHGDH-213ENST00000641272 POLKQ9UBT6 870 aa23.07■■□□□ 1.28
PHGDH-213ENST00000641272 EIF4G2P78344 907 aaKnown RBP eCLIP23.06■■□□□ 1.287e-14■■■■■ 63.8
PHGDH-213ENST00000641272 UBR3Q6ZT12 1888 aa23.05■■□□□ 1.28
PHGDH-213ENST00000641272 NLGN2Q8NFZ4 835 aa23.05■■□□□ 1.28
PHGDH-213ENST00000641272 UTRNP46939 3433 aa23.04■■□□□ 1.28
PHGDH-213ENST00000641272 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
PHGDH-213ENST00000641272 EIF4A2Q14240 407 aaKnown RBP23.03■■□□□ 1.28
PHGDH-213ENST00000641272 GPR162Q16538 588 aa23.03■■□□□ 1.28
PHGDH-213ENST00000641272 SPG7Q9UQ90 795 aa23.03■■□□□ 1.28
PHGDH-213ENST00000641272 ZNF784Q8NCA9 323 aaPredicted RBP23.02■■□□□ 1.28
PHGDH-213ENST00000641272 PIGBQ92521 554 aa23.02■■□□□ 1.28
PHGDH-213ENST00000641272 SMIM5Q71RC9 77 aa23.01■■□□□ 1.27
PHGDH-213ENST00000641272 PHF14O94880 888 aa23■■□□□ 1.27
PHGDH-213ENST00000641272 AMIGO3Q86WK7 504 aa23■■□□□ 1.27
PHGDH-213ENST00000641272 AK7Q96M32 723 aa23■■□□□ 1.27
PHGDH-213ENST00000641272 PANK3Q9H999 370 aa23■■□□□ 1.27
PHGDH-213ENST00000641272 SMARCC1Q92922 1105 aaPredicted RBP22.99■■□□□ 1.27
PHGDH-213ENST00000641272 PHKG2P15735 406 aa22.98■■□□□ 1.27
PHGDH-213ENST00000641272 NKX1-1Q15270 411 aaPredicted RBP22.98■■□□□ 1.27
PHGDH-213ENST00000641272 TMOD3Q9NYL9 352 aa22.98■■□□□ 1.27
PHGDH-213ENST00000641272 IGSF1Q8N6C5 1336 aa22.96■■□□□ 1.27
PHGDH-213ENST00000641272 IFNL2Q8IZJ0 200 aa22.95■■□□□ 1.26
PHGDH-213ENST00000641272 LINC00116Q8NCU8 138 aa22.95■■□□□ 1.26
PHGDH-213ENST00000641272 ASAP1Q9ULH1 1129 aa22.95■■□□□ 1.26
PHGDH-213ENST00000641272 LOC102724428A0A0B4J2F2 783 aa22.94■■□□□ 1.26
PHGDH-213ENST00000641272 SIK1P57059 783 aa22.94■■□□□ 1.26
PHGDH-213ENST00000641272 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.94■■□□□ 1.26
PHGDH-213ENST00000641272 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.92■■□□□ 1.26
PHGDH-213ENST00000641272 YBX3P16989 372 aaKnown RBP eCLIP22.92■■□□□ 1.262e-7■□□□□ 10.4
PHGDH-213ENST00000641272 ITPK1Q13572 414 aa22.92■■□□□ 1.26
PHGDH-213ENST00000641272 FLAD1Q8NFF5 587 aa22.92■■□□□ 1.26
PHGDH-213ENST00000641272 MORC1Q86VD1 984 aa22.91■■□□□ 1.26
PHGDH-213ENST00000641272 COL5A3P25940 1745 aaPredicted RBP22.91■■□□□ 1.26
PHGDH-213ENST00000641272 KDM6AO15550 1401 aaPredicted RBP22.91■■□□□ 1.26
PHGDH-213ENST00000641272 AEBP1Q8IUX7 1158 aa22.9■■□□□ 1.26
PHGDH-213ENST00000641272 KDRP35968 1356 aa22.89■■□□□ 1.26
PHGDH-213ENST00000641272 GOLGB1Q14789 3259 aaKnown RBP22.89■■□□□ 1.26
PHGDH-213ENST00000641272 GNPATO15228 680 aa22.89■■□□□ 1.25
PHGDH-213ENST00000641272 ATP6V1AP38606 617 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms