RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 CCDC39Q9UFE4 941 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 ESPNB1AK53 854 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 RRP9O43818 475 aaKnown RBP6.76□□□□□ -1.33
SCN3A-210ENST00000640652 HSP90AB4PQ58FF6 505 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 CCDC30Q5VVM6 783 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 RPAP2Q8IXW5 612 aaPredicted RBP6.76□□□□□ -1.33
SCN3A-210ENST00000640652 RIMBP3CA6NJZ7 1639 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 RIMBP3BA6NNM3 1639 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 RIMBP3Q9UFD9 1639 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 RBM25P49756 843 aaKnown RBP6.76□□□□□ -1.33
SCN3A-210ENST00000640652 TNPO1Q92973 898 aaKnown RBP6.76□□□□□ -1.33
SCN3A-210ENST00000640652 PTCH1Q13635 1447 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 FYB1O15117 783 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 SOX12O15370 315 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 LETM1O95202 739 aaPredicted RBP6.76□□□□□ -1.33
SCN3A-210ENST00000640652 MAP7D2Q96T17 732 aa6.76□□□□□ -1.33
SCN3A-210ENST00000640652 BAZ2BQ9UIF8 2168 aaKnown RBP6.75□□□□□ -1.33
SCN3A-210ENST00000640652 TSPYL4Q9UJ04 414 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 FKBP5Q13451 457 aaPredicted RBP6.75□□□□□ -1.33
SCN3A-210ENST00000640652 PTPRMP28827 1452 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 DIAPH3Q9NSV4 1193 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.75□□□□□ -1.33
SCN3A-210ENST00000640652 FGD1P98174 961 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 CAVIN1Q6NZI2 390 aaKnown RBP6.75□□□□□ -1.33
SCN3A-210ENST00000640652 KIF3AQ9Y496 699 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 BRPF1P55201 1214 aaPredicted RBP6.75□□□□□ -1.33
SCN3A-210ENST00000640652 LRRCC1Q9C099 1032 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 WASLO00401 505 aaPredicted RBP6.75□□□□□ -1.33
SCN3A-210ENST00000640652 FAM184AQ8NB25 1140 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 RILPL2Q969X0 211 aa6.75□□□□□ -1.33
SCN3A-210ENST00000640652 CHMP4CQ96CF2 233 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 MBIPQ9NS73 344 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 NRKQ7Z2Y5 1582 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 ZKSCAN1P17029 563 aaPredicted RBP6.74□□□□□ -1.33
SCN3A-210ENST00000640652 RAB3GAP1Q15042 981 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 TTC22Q5TAA0 569 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 SETD1AO15047 1707 aaKnown RBP6.74□□□□□ -1.33
SCN3A-210ENST00000640652 KLHL40Q2TBA0 621 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 UBR1Q8IWV7 1749 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 NLRP1Q9C000 1473 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 LAMA4Q16363 1823 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 PLPPR3Q6T4P5 718 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 ANO2Q9NQ90 1003 aa6.74□□□□□ -1.33
SCN3A-210ENST00000640652 UBTFL1P0CB47 393 aaPredicted RBP6.74□□□□□ -1.33
SCN3A-210ENST00000640652 CNTROBQ8N137 903 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 PDCP20941 246 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 FAM69CQ0P6D2 419 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 DMRT2Q9Y5R5 561 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 ZSCAN30Q86W11 494 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 PHF23Q9BUL5 403 aaPredicted RBP6.73□□□□□ -1.33
SCN3A-210ENST00000640652 TRIM35Q9UPQ4 493 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 WDR33Q9C0J8 1336 aaKnown RBP6.73□□□□□ -1.33
SCN3A-210ENST00000640652 SEC24BO95487 1268 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 RNF20Q5VTR2 975 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 DRC7Q8IY82 874 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 HIP1O00291 1037 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 CLCN1P35523 988 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 HS1BP3Q53T59 392 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 NUDT16Q96DE0 195 aaKnown RBP6.73□□□□□ -1.33
SCN3A-210ENST00000640652 AATKQ6ZMQ8 1374 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 IBTKQ9P2D0 1353 aaPredicted RBP6.73□□□□□ -1.33
SCN3A-210ENST00000640652 SLC4A2P04920 1241 aa6.73□□□□□ -1.33
SCN3A-210ENST00000640652 SULT6B1Q6IMI4 303 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 MSH6P52701 1360 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 MCM5P33992 734 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 ANO8Q9HCE9 1232 aaPredicted RBP6.72□□□□□ -1.33
SCN3A-210ENST00000640652 ARHGEF40Q8TER5 1519 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 KIF13AQ9H1H9 1805 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 NEK4P51957 841 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 RGPD2P0DJD1 1756 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 XRCC6P12956 609 aaKnown RBP eCLIP6.72□□□□□ -1.33
SCN3A-210ENST00000640652 RRS1Q15050 365 aaKnown RBP6.72□□□□□ -1.33
SCN3A-210ENST00000640652 PLEKHF1Q96S99 279 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 C9orf78Q9NZ63 289 aaPredicted RBP6.72□□□□□ -1.33
SCN3A-210ENST00000640652 SOS1Q07889 1333 aaPredicted RBP6.72□□□□□ -1.33
SCN3A-210ENST00000640652 COL3A1P02461 1466 aaPredicted RBP6.72□□□□□ -1.33
SCN3A-210ENST00000640652 ARHGEF10O15013 1369 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 TOPAZ1Q8N9V7 1692 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 KIAA0232Q92628 1395 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 TPM3P06753 285 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 ERC1Q8IUD2 1116 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 TSPY26PQ9H489 355 aa6.72□□□□□ -1.33
SCN3A-210ENST00000640652 ABCC4O15439 1325 aa6.71□□□□□ -1.33
SCN3A-210ENST00000640652 HMGN5P82970 282 aaKnown RBP6.71□□□□□ -1.33
SCN3A-210ENST00000640652 PLCB2Q00722 1185 aa6.71□□□□□ -1.33
SCN3A-210ENST00000640652 MX1P20591 662 aa6.71□□□□□ -1.33
SCN3A-210ENST00000640652 RAB11FIP3O75154 756 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 MRPL50Q8N5N7 158 aaKnown RBP6.71□□□□□ -1.34
SCN3A-210ENST00000640652 ANTXR1Q9H6X2 564 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 PSMA5P28066 241 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 ANAPC15P60006 121 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 MYH1P12882 1939 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 TTC21AQ8NDW8 1320 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 ZBTB7CA1YPR0 619 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 CPSF1Q10570 1443 aaKnown RBP6.71□□□□□ -1.34
SCN3A-210ENST00000640652 SSH2Q76I76 1423 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 NEXNQ0ZGT2 675 aa6.71□□□□□ -1.34
SCN3A-210ENST00000640652 C1orf141Q5JVX7 400 aa6.7□□□□□ -1.34
SCN3A-210ENST00000640652 NOL8Q76FK4 1167 aaKnown RBP6.7□□□□□ -1.34
SCN3A-210ENST00000640652 FLT4P35916 1363 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms